Variant report

Variant	rs59024254
Chromosome Location	chr6:45089401-45089402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1402597	0.83[AFR][1000 genomes]
rs1411149	0.83[AFR][1000 genomes]
rs16872844	0.83[AFR][1000 genomes]
rs16872874	0.83[AFR][1000 genomes]
rs16872894	0.83[AFR][1000 genomes]
rs16872910	0.83[AFR][1000 genomes]
rs16872923	0.83[AFR][1000 genomes]
rs1853650	0.83[AFR][1000 genomes]
rs56009799	0.83[AFR][1000 genomes]
rs56041234	1.00[EUR][1000 genomes]
rs56218508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310184	0.83[AFR][1000 genomes]
rs56909118	0.83[AFR][1000 genomes]
rs57619602	0.83[AFR][1000 genomes]
rs57621038	0.83[AFR][1000 genomes]
rs57864178	0.83[AFR][1000 genomes]
rs57953368	0.83[AFR][1000 genomes]
rs58164361	0.83[AFR][1000 genomes]
rs58902965	0.83[AFR][1000 genomes]
rs58929603	0.83[AFR][1000 genomes]
rs59582101	0.83[AFR][1000 genomes]
rs60975018	0.83[AFR][1000 genomes]
rs72857008	1.00[AMR][1000 genomes]
rs72857044	1.00[AMR][1000 genomes]
rs72857059	1.00[AMR][1000 genomes]
rs72857065	1.00[AMR][1000 genomes]
rs72857066	1.00[AMR][1000 genomes]
rs72858522	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858523	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858529	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858566	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72865965	1.00[AMR][1000 genomes]
rs72865980	1.00[AMR][1000 genomes]
rs72867405	1.00[AMR][1000 genomes]
rs72867426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72870914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72870922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735259	0.83[AFR][1000 genomes]
rs73735261	0.83[AFR][1000 genomes]
rs73735265	0.83[AFR][1000 genomes]
rs73735270	0.83[AFR][1000 genomes]
rs73735285	0.83[AFR][1000 genomes]
rs73735286	0.83[AFR][1000 genomes]
rs73735290	0.83[AFR][1000 genomes]
rs73735292	0.83[AFR][1000 genomes]
rs73735296	0.83[AFR][1000 genomes]
rs73735300	0.83[AFR][1000 genomes]
rs73737803	0.83[AFR][1000 genomes]
rs73737805	0.83[AFR][1000 genomes]
rs73737807	0.83[AFR][1000 genomes]
rs73737811	0.83[AFR][1000 genomes]
rs73737812	0.83[AFR][1000 genomes]
rs73737813	0.83[AFR][1000 genomes]
rs73737819	0.83[AFR][1000 genomes]
rs73737822	0.83[AFR][1000 genomes]
rs73737825	0.83[AFR][1000 genomes]
rs73737828	0.83[AFR][1000 genomes]
rs73737830	0.83[AFR][1000 genomes]
rs73737833	0.83[AFR][1000 genomes]
rs73737834	0.83[AFR][1000 genomes]
rs73737835	0.83[AFR][1000 genomes]
rs73737851	0.83[AFR][1000 genomes]
rs73737859	0.83[AFR][1000 genomes]
rs73737860	0.83[AFR][1000 genomes]
rs73737862	0.83[AFR][1000 genomes]
rs73737863	0.83[AFR][1000 genomes]
rs73737864	0.83[AFR][1000 genomes]
rs73737865	0.83[AFR][1000 genomes]
rs73737869	0.83[AFR][1000 genomes]
rs73737870	0.83[AFR][1000 genomes]
rs73737871	0.83[AFR][1000 genomes]
rs73737873	0.83[AFR][1000 genomes]
rs73737883	0.83[AFR][1000 genomes]
rs73737899	0.83[AFR][1000 genomes]
rs73737900	0.83[AFR][1000 genomes]
rs73738603	1.00[AMR][1000 genomes]
rs73738604	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45089000-45099400	Weak transcription	Fetal Heart	heart

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