Variant report

Variant	rs73735270
Chromosome Location	chr6:44922392-44922393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44917876..44920561-chr6:44920562..44922585,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1402597	1.00[AFR][1000 genomes]
rs1411149	1.00[AFR][1000 genomes]
rs16872599	1.00[AFR][1000 genomes]
rs16872702	1.00[AFR][1000 genomes]
rs16872715	1.00[AFR][1000 genomes]
rs16872738	1.00[AFR][1000 genomes]
rs16872741	1.00[AFR][1000 genomes]
rs16872742	0.83[AFR][1000 genomes]
rs16872844	1.00[AFR][1000 genomes]
rs16872874	1.00[AFR][1000 genomes]
rs16872894	1.00[AFR][1000 genomes]
rs16872910	1.00[AFR][1000 genomes]
rs16872923	1.00[AFR][1000 genomes]
rs1853650	1.00[AFR][1000 genomes]
rs55806924	1.00[AFR][1000 genomes]
rs56009799	1.00[AFR][1000 genomes]
rs56310184	1.00[AFR][1000 genomes]
rs56354231	1.00[AFR][1000 genomes]
rs56909118	1.00[AFR][1000 genomes]
rs57619602	1.00[AFR][1000 genomes]
rs57621038	1.00[AFR][1000 genomes]
rs57864178	1.00[AFR][1000 genomes]
rs57953368	1.00[AFR][1000 genomes]
rs58164361	1.00[AFR][1000 genomes]
rs58902965	1.00[AFR][1000 genomes]
rs58929603	1.00[AFR][1000 genomes]
rs59024254	0.83[AFR][1000 genomes]
rs59582101	1.00[AFR][1000 genomes]
rs60975018	1.00[AFR][1000 genomes]
rs61700790	1.00[AFR][1000 genomes]
rs73734767	1.00[AFR][1000 genomes]
rs73734770	1.00[AFR][1000 genomes]
rs73734771	1.00[AFR][1000 genomes]
rs73734772	1.00[AFR][1000 genomes]
rs73734775	1.00[AFR][1000 genomes]
rs73734782	1.00[AFR][1000 genomes]
rs73735212	1.00[AFR][1000 genomes]
rs73735213	1.00[AFR][1000 genomes]
rs73735221	1.00[AFR][1000 genomes]
rs73735224	1.00[AFR][1000 genomes]
rs73735225	1.00[AFR][1000 genomes]
rs73735229	0.83[AFR][1000 genomes]
rs73735231	0.83[AFR][1000 genomes]
rs73735235	1.00[AFR][1000 genomes]
rs73735236	1.00[AFR][1000 genomes]
rs73735254	1.00[AFR][1000 genomes]
rs73735259	1.00[AFR][1000 genomes]
rs73735261	1.00[AFR][1000 genomes]
rs73735265	1.00[AFR][1000 genomes]
rs73735285	1.00[AFR][1000 genomes]
rs73735286	1.00[AFR][1000 genomes]
rs73735290	1.00[AFR][1000 genomes]
rs73735292	1.00[AFR][1000 genomes]
rs73735296	1.00[AFR][1000 genomes]
rs73735300	1.00[AFR][1000 genomes]
rs73737803	1.00[AFR][1000 genomes]
rs73737805	1.00[AFR][1000 genomes]
rs73737807	1.00[AFR][1000 genomes]
rs73737811	1.00[AFR][1000 genomes]
rs73737812	1.00[AFR][1000 genomes]
rs73737813	1.00[AFR][1000 genomes]
rs73737819	1.00[AFR][1000 genomes]
rs73737822	1.00[AFR][1000 genomes]
rs73737825	1.00[AFR][1000 genomes]
rs73737828	1.00[AFR][1000 genomes]
rs73737830	1.00[AFR][1000 genomes]
rs73737833	1.00[AFR][1000 genomes]
rs73737834	1.00[AFR][1000 genomes]
rs73737835	1.00[AFR][1000 genomes]
rs73737851	1.00[AFR][1000 genomes]
rs73737859	1.00[AFR][1000 genomes]
rs73737860	1.00[AFR][1000 genomes]
rs73737862	1.00[AFR][1000 genomes]
rs73737863	1.00[AFR][1000 genomes]
rs73737864	1.00[AFR][1000 genomes]
rs73737865	1.00[AFR][1000 genomes]
rs73737869	1.00[AFR][1000 genomes]
rs73737870	1.00[AFR][1000 genomes]
rs73737871	1.00[AFR][1000 genomes]
rs73737873	1.00[AFR][1000 genomes]
rs73737883	1.00[AFR][1000 genomes]
rs73737899	1.00[AFR][1000 genomes]
rs73737900	1.00[AFR][1000 genomes]
rs73738604	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44913400-44930000	Weak transcription	Pancreas	Pancrea
2	chr6:44913600-44928600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:44914000-44922800	Weak transcription	HSMM	muscle
4	chr6:44914600-44923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:44915400-44932800	Weak transcription	Left Ventricle	heart
6	chr6:44916000-44923600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:44916600-44922600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:44917800-44923400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:44917800-44924800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:44918000-44922400	Weak transcription	Fetal Lung	lung
11	chr6:44918000-44923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:44918000-44925000	Weak transcription	Fetal Heart	heart
13	chr6:44918000-44926600	Weak transcription	Esophagus	oesophagus
14	chr6:44918000-44928400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:44918200-44928400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:44918400-44922800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:44918600-44923000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:44919000-44922400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:44919600-44925000	Weak transcription	Aorta	Aorta
20	chr6:44919600-44925400	Weak transcription	Ovary	ovary
21	chr6:44919600-44927600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:44919600-44943200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:44919800-44928600	Weak transcription	HepG2	liver
24	chr6:44920200-44924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:44920400-44922600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:44920400-44923000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:44920600-44924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:44920600-44937600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:44921200-44922800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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