Variant report

Variant	rs58902965
Chromosome Location	chr6:44952316-44952317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1402597	1.00[AFR][1000 genomes]
rs1411149	1.00[AFR][1000 genomes]
rs16872599	1.00[AFR][1000 genomes]
rs16872702	1.00[AFR][1000 genomes]
rs16872715	1.00[AFR][1000 genomes]
rs16872738	1.00[AFR][1000 genomes]
rs16872741	1.00[AFR][1000 genomes]
rs16872742	0.83[AFR][1000 genomes]
rs16872844	1.00[AFR][1000 genomes]
rs16872874	1.00[AFR][1000 genomes]
rs16872894	1.00[AFR][1000 genomes]
rs16872910	1.00[AFR][1000 genomes]
rs16872923	1.00[AFR][1000 genomes]
rs1853650	1.00[AFR][1000 genomes]
rs55806924	1.00[AFR][1000 genomes]
rs56009799	1.00[AFR][1000 genomes]
rs56310184	1.00[AFR][1000 genomes]
rs56354231	1.00[AFR][1000 genomes]
rs56909118	1.00[AFR][1000 genomes]
rs57619602	1.00[AFR][1000 genomes]
rs57621038	1.00[AFR][1000 genomes]
rs57864178	1.00[AFR][1000 genomes]
rs57953368	1.00[AFR][1000 genomes]
rs58164361	1.00[AFR][1000 genomes]
rs58929603	1.00[AFR][1000 genomes]
rs59024254	0.83[AFR][1000 genomes]
rs59582101	1.00[AFR][1000 genomes]
rs60975018	1.00[AFR][1000 genomes]
rs61700790	1.00[AFR][1000 genomes]
rs73734770	1.00[AFR][1000 genomes]
rs73734771	1.00[AFR][1000 genomes]
rs73734772	1.00[AFR][1000 genomes]
rs73734775	1.00[AFR][1000 genomes]
rs73734782	1.00[AFR][1000 genomes]
rs73735212	1.00[AFR][1000 genomes]
rs73735213	1.00[AFR][1000 genomes]
rs73735221	1.00[AFR][1000 genomes]
rs73735224	1.00[AFR][1000 genomes]
rs73735225	1.00[AFR][1000 genomes]
rs73735229	0.83[AFR][1000 genomes]
rs73735231	0.83[AFR][1000 genomes]
rs73735235	1.00[AFR][1000 genomes]
rs73735236	1.00[AFR][1000 genomes]
rs73735254	1.00[AFR][1000 genomes]
rs73735259	1.00[AFR][1000 genomes]
rs73735261	1.00[AFR][1000 genomes]
rs73735265	1.00[AFR][1000 genomes]
rs73735270	1.00[AFR][1000 genomes]
rs73735285	1.00[AFR][1000 genomes]
rs73735286	1.00[AFR][1000 genomes]
rs73735290	1.00[AFR][1000 genomes]
rs73735292	1.00[AFR][1000 genomes]
rs73735296	1.00[AFR][1000 genomes]
rs73735300	1.00[AFR][1000 genomes]
rs73737803	1.00[AFR][1000 genomes]
rs73737805	1.00[AFR][1000 genomes]
rs73737807	1.00[AFR][1000 genomes]
rs73737811	1.00[AFR][1000 genomes]
rs73737812	1.00[AFR][1000 genomes]
rs73737813	1.00[AFR][1000 genomes]
rs73737819	1.00[AFR][1000 genomes]
rs73737822	1.00[AFR][1000 genomes]
rs73737825	1.00[AFR][1000 genomes]
rs73737828	1.00[AFR][1000 genomes]
rs73737830	1.00[AFR][1000 genomes]
rs73737833	1.00[AFR][1000 genomes]
rs73737834	1.00[AFR][1000 genomes]
rs73737835	1.00[AFR][1000 genomes]
rs73737851	1.00[AFR][1000 genomes]
rs73737859	1.00[AFR][1000 genomes]
rs73737860	1.00[AFR][1000 genomes]
rs73737862	1.00[AFR][1000 genomes]
rs73737863	1.00[AFR][1000 genomes]
rs73737864	1.00[AFR][1000 genomes]
rs73737865	1.00[AFR][1000 genomes]
rs73737869	1.00[AFR][1000 genomes]
rs73737870	1.00[AFR][1000 genomes]
rs73737871	1.00[AFR][1000 genomes]
rs73737873	1.00[AFR][1000 genomes]
rs73737883	1.00[AFR][1000 genomes]
rs73737899	1.00[AFR][1000 genomes]
rs73737900	1.00[AFR][1000 genomes]
rs73738604	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44940800-44957000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:44946600-44955000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:44946600-44955000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:44947800-44962000	Weak transcription	Pancreas	Pancrea
5	chr6:44951200-44980800	Weak transcription	Aorta	Aorta
6	chr6:44952200-44953400	Weak transcription	HepG2	liver

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