Variant report

Variant	rs16872742
Chromosome Location	chr6:44822789-44822790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44817728..44819933-chr6:44820094..44823058,2	K562	blood:
2	chr6:44816641..44819151-chr6:44821596..44823845,2	MCF-7	breast:
3	chr6:44821812..44824546-chr6:44828040..44830649,2	K562	blood:

rs_ID	r²[population]
rs1402597	0.83[AFR][1000 genomes]
rs1411149	0.83[AFR][1000 genomes]
rs16872599	0.83[AFR][1000 genomes]
rs16872702	0.83[AFR][1000 genomes]
rs16872715	0.83[AFR][1000 genomes]
rs16872738	0.83[AFR][1000 genomes]
rs16872741	0.83[AFR][1000 genomes]
rs16872844	0.83[AFR][1000 genomes]
rs16872874	0.83[AFR][1000 genomes]
rs16872894	0.83[AFR][1000 genomes]
rs16872910	0.83[AFR][1000 genomes]
rs16872923	0.83[AFR][1000 genomes]
rs55806924	0.83[AFR][1000 genomes]
rs55905150	0.83[AFR][1000 genomes]
rs56009799	0.83[AFR][1000 genomes]
rs56310184	0.83[AFR][1000 genomes]
rs56354231	0.83[AFR][1000 genomes]
rs57619602	0.83[AFR][1000 genomes]
rs57621038	0.83[AFR][1000 genomes]
rs57864178	0.83[AFR][1000 genomes]
rs57953368	0.83[AFR][1000 genomes]
rs58164361	0.83[AFR][1000 genomes]
rs58902965	0.83[AFR][1000 genomes]
rs58929603	0.83[AFR][1000 genomes]
rs59093912	0.83[AFR][1000 genomes]
rs59582101	0.83[AFR][1000 genomes]
rs60975018	0.83[AFR][1000 genomes]
rs61700790	0.83[AFR][1000 genomes]
rs73734735	0.83[AFR][1000 genomes]
rs73734760	0.83[AFR][1000 genomes]
rs73734767	0.83[AFR][1000 genomes]
rs73734770	0.83[AFR][1000 genomes]
rs73734771	0.83[AFR][1000 genomes]
rs73734772	0.83[AFR][1000 genomes]
rs73734775	0.83[AFR][1000 genomes]
rs73734782	0.83[AFR][1000 genomes]
rs73735212	0.83[AFR][1000 genomes]
rs73735213	0.83[AFR][1000 genomes]
rs73735221	0.83[AFR][1000 genomes]
rs73735224	0.83[AFR][1000 genomes]
rs73735225	0.83[AFR][1000 genomes]
rs73735229	1.00[AFR][1000 genomes]
rs73735231	1.00[AFR][1000 genomes]
rs73735235	0.83[AFR][1000 genomes]
rs73735236	0.83[AFR][1000 genomes]
rs73735254	0.83[AFR][1000 genomes]
rs73735259	0.83[AFR][1000 genomes]
rs73735261	0.83[AFR][1000 genomes]
rs73735265	0.83[AFR][1000 genomes]
rs73735270	0.83[AFR][1000 genomes]
rs73735285	0.83[AFR][1000 genomes]
rs73735286	0.83[AFR][1000 genomes]
rs73735290	0.83[AFR][1000 genomes]
rs73735292	0.83[AFR][1000 genomes]
rs73735296	0.83[AFR][1000 genomes]
rs73735300	0.83[AFR][1000 genomes]
rs73737803	0.83[AFR][1000 genomes]
rs73737805	0.83[AFR][1000 genomes]
rs73737807	0.83[AFR][1000 genomes]
rs73737811	0.83[AFR][1000 genomes]
rs73737812	0.83[AFR][1000 genomes]
rs73737813	0.83[AFR][1000 genomes]
rs73737819	0.83[AFR][1000 genomes]
rs73737822	0.83[AFR][1000 genomes]
rs73737825	0.83[AFR][1000 genomes]
rs73737828	0.83[AFR][1000 genomes]
rs73737830	0.83[AFR][1000 genomes]
rs73737833	0.83[AFR][1000 genomes]
rs73737834	0.83[AFR][1000 genomes]
rs73737835	0.83[AFR][1000 genomes]
rs73737851	0.83[AFR][1000 genomes]
rs73737859	0.83[AFR][1000 genomes]
rs73737860	0.83[AFR][1000 genomes]
rs73737862	0.83[AFR][1000 genomes]
rs73737863	0.83[AFR][1000 genomes]
rs73737864	0.83[AFR][1000 genomes]
rs73737865	0.83[AFR][1000 genomes]
rs73737869	0.83[AFR][1000 genomes]
rs73737870	0.83[AFR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:44818400-44823200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:44818400-44823400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:44818400-44823400	Weak transcription	HSMMtube	muscle
6	chr6:44818400-44825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:44818400-44826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:44818800-44823400	Weak transcription	Fetal Stomach	stomach
9	chr6:44818800-44823600	Weak transcription	HSMM	muscle
10	chr6:44819400-44823200	Weak transcription	Osteobl	bone
11	chr6:44819400-44823400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:44819600-44823000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:44819600-44823200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:44820000-44824600	Enhancers	Fetal Intestine Large	intestine
15	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:44821600-44824800	Enhancers	Primary T cells from cord blood	blood
17	chr6:44821600-44824800	Enhancers	Fetal Intestine Small	intestine
18	chr6:44822000-44824400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:44822200-44823200	Enhancers	Fetal Thymus	thymus
20	chr6:44822200-44824400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:44822400-44824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:44822600-44823000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:44822600-44823400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:44822600-44823400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:44822600-44824000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr6:44822600-44824600	Enhancers	Fetal Heart	heart
27	chr6:44822600-44828400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links