Variant report

Variant	rs16872894
Chromosome Location	chr6:44889804-44889805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44888776..44891351-chr6:45344894..45347692,2	K562	blood:
2	chr6:44879682..44885595-chr6:44885746..44891635,7	K562	blood:

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1402597	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1411149	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16872599	1.00[AFR][1000 genomes]
rs16872702	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16872715	1.00[AFR][1000 genomes]
rs16872738	1.00[AFR][1000 genomes]
rs16872741	1.00[AFR][1000 genomes]
rs16872742	0.83[AFR][1000 genomes]
rs16872844	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16872874	1.00[AFR][1000 genomes]
rs16872910	1.00[AFR][1000 genomes]
rs16872923	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1853650	1.00[AFR][1000 genomes]
rs55806924	1.00[AFR][1000 genomes]
rs55905150	1.00[AFR][1000 genomes]
rs56009799	1.00[AFR][1000 genomes]
rs56310184	1.00[AFR][1000 genomes]
rs56354231	1.00[AFR][1000 genomes]
rs56909118	1.00[AFR][1000 genomes]
rs57619602	1.00[AFR][1000 genomes]
rs57621038	1.00[AFR][1000 genomes]
rs57864178	1.00[AFR][1000 genomes]
rs57953368	1.00[AFR][1000 genomes]
rs58164361	1.00[AFR][1000 genomes]
rs58902965	1.00[AFR][1000 genomes]
rs58929603	1.00[AFR][1000 genomes]
rs59024254	0.83[AFR][1000 genomes]
rs59093912	1.00[AFR][1000 genomes]
rs59582101	1.00[AFR][1000 genomes]
rs60975018	1.00[AFR][1000 genomes]
rs61700790	1.00[AFR][1000 genomes]
rs73734760	1.00[AFR][1000 genomes]
rs73734767	1.00[AFR][1000 genomes]
rs73734770	1.00[AFR][1000 genomes]
rs73734771	1.00[AFR][1000 genomes]
rs73734772	1.00[AFR][1000 genomes]
rs73734775	1.00[AFR][1000 genomes]
rs73734782	1.00[AFR][1000 genomes]
rs73735212	1.00[AFR][1000 genomes]
rs73735213	1.00[AFR][1000 genomes]
rs73735221	1.00[AFR][1000 genomes]
rs73735224	1.00[AFR][1000 genomes]
rs73735225	1.00[AFR][1000 genomes]
rs73735229	0.83[AFR][1000 genomes]
rs73735231	0.83[AFR][1000 genomes]
rs73735235	1.00[AFR][1000 genomes]
rs73735236	1.00[AFR][1000 genomes]
rs73735254	1.00[AFR][1000 genomes]
rs73735259	1.00[AFR][1000 genomes]
rs73735261	1.00[AFR][1000 genomes]
rs73735265	1.00[AFR][1000 genomes]
rs73735270	1.00[AFR][1000 genomes]
rs73735285	1.00[AFR][1000 genomes]
rs73735286	1.00[AFR][1000 genomes]
rs73735290	1.00[AFR][1000 genomes]
rs73735292	1.00[AFR][1000 genomes]
rs73735296	1.00[AFR][1000 genomes]
rs73735300	1.00[AFR][1000 genomes]
rs73737803	1.00[AFR][1000 genomes]
rs73737805	1.00[AFR][1000 genomes]
rs73737807	1.00[AFR][1000 genomes]
rs73737811	1.00[AFR][1000 genomes]
rs73737812	1.00[AFR][1000 genomes]
rs73737813	1.00[AFR][1000 genomes]
rs73737819	1.00[AFR][1000 genomes]
rs73737822	1.00[AFR][1000 genomes]
rs73737825	1.00[AFR][1000 genomes]
rs73737828	1.00[AFR][1000 genomes]
rs73737830	1.00[AFR][1000 genomes]
rs73737833	1.00[AFR][1000 genomes]
rs73737834	1.00[AFR][1000 genomes]
rs73737835	1.00[AFR][1000 genomes]
rs73737851	1.00[AFR][1000 genomes]
rs73737859	1.00[AFR][1000 genomes]
rs73737860	1.00[AFR][1000 genomes]
rs73737862	1.00[AFR][1000 genomes]
rs73737863	1.00[AFR][1000 genomes]
rs73737864	1.00[AFR][1000 genomes]
rs73737865	1.00[AFR][1000 genomes]
rs73737869	1.00[AFR][1000 genomes]
rs73737870	1.00[AFR][1000 genomes]
rs73737871	1.00[AFR][1000 genomes]
rs73737873	1.00[AFR][1000 genomes]
rs73737883	1.00[AFR][1000 genomes]
rs73737899	1.00[AFR][1000 genomes]
rs73737900	1.00[AFR][1000 genomes]
rs73738604	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44877800-44892800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44881000-44894600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:44885600-44899200	Weak transcription	Fetal Stomach	stomach
4	chr6:44887000-44893200	Weak transcription	NHDF-Ad	bronchial
5	chr6:44888000-44890200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:44888000-44893000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:44888000-44893800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:44888000-44896200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:44888200-44896200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:44888400-44893800	Enhancers	Primary T cells from cord blood	blood
11	chr6:44888600-44893600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:44888800-44890000	Enhancers	Stomach Mucosa	stomach
13	chr6:44889200-44890000	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr6:44889200-44890200	Enhancers	Fetal Heart	heart
15	chr6:44889200-44890800	Enhancers	Liver	Liver
16	chr6:44889200-44891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:44889200-44891200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:44889200-44891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:44889200-44892800	Weak transcription	K562	blood
20	chr6:44889200-44893000	Weak transcription	NH-A	brain
21	chr6:44889400-44890000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:44889400-44890000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:44889400-44892800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:44889600-44890000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:44889600-44890000	Enhancers	Gastric	stomach
26	chr6:44889600-44890200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:44889600-44892800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:44889800-44890200	Enhancers	HepG2	liver

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