Variant report

Variant	rs73737900
Chromosome Location	chr6:45086548-45086549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1402597	1.00[AFR][1000 genomes]
rs1411149	1.00[AFR][1000 genomes]
rs16872844	1.00[AFR][1000 genomes]
rs16872874	1.00[AFR][1000 genomes]
rs16872894	1.00[AFR][1000 genomes]
rs16872910	1.00[AFR][1000 genomes]
rs16872923	1.00[AFR][1000 genomes]
rs1853650	1.00[AFR][1000 genomes]
rs56009799	1.00[AFR][1000 genomes]
rs56310184	1.00[AFR][1000 genomes]
rs56909118	1.00[AFR][1000 genomes]
rs57619602	1.00[AFR][1000 genomes]
rs57621038	1.00[AFR][1000 genomes]
rs57864178	1.00[AFR][1000 genomes]
rs57953368	1.00[AFR][1000 genomes]
rs58164361	1.00[AFR][1000 genomes]
rs58902965	1.00[AFR][1000 genomes]
rs58929603	1.00[AFR][1000 genomes]
rs59024254	0.83[AFR][1000 genomes]
rs59582101	1.00[AFR][1000 genomes]
rs60975018	1.00[AFR][1000 genomes]
rs73735259	1.00[AFR][1000 genomes]
rs73735261	1.00[AFR][1000 genomes]
rs73735265	1.00[AFR][1000 genomes]
rs73735270	1.00[AFR][1000 genomes]
rs73735285	1.00[AFR][1000 genomes]
rs73735286	1.00[AFR][1000 genomes]
rs73735290	1.00[AFR][1000 genomes]
rs73735292	1.00[AFR][1000 genomes]
rs73735296	1.00[AFR][1000 genomes]
rs73735300	1.00[AFR][1000 genomes]
rs73737803	1.00[AFR][1000 genomes]
rs73737805	1.00[AFR][1000 genomes]
rs73737807	1.00[AFR][1000 genomes]
rs73737811	1.00[AFR][1000 genomes]
rs73737812	1.00[AFR][1000 genomes]
rs73737813	1.00[AFR][1000 genomes]
rs73737819	1.00[AFR][1000 genomes]
rs73737822	1.00[AFR][1000 genomes]
rs73737825	1.00[AFR][1000 genomes]
rs73737828	1.00[AFR][1000 genomes]
rs73737830	1.00[AFR][1000 genomes]
rs73737833	1.00[AFR][1000 genomes]
rs73737834	1.00[AFR][1000 genomes]
rs73737835	1.00[AFR][1000 genomes]
rs73737851	1.00[AFR][1000 genomes]
rs73737859	1.00[AFR][1000 genomes]
rs73737860	1.00[AFR][1000 genomes]
rs73737862	1.00[AFR][1000 genomes]
rs73737863	1.00[AFR][1000 genomes]
rs73737864	1.00[AFR][1000 genomes]
rs73737865	1.00[AFR][1000 genomes]
rs73737869	1.00[AFR][1000 genomes]
rs73737870	1.00[AFR][1000 genomes]
rs73737871	1.00[AFR][1000 genomes]
rs73737873	1.00[AFR][1000 genomes]
rs73737883	1.00[AFR][1000 genomes]
rs73737899	1.00[AFR][1000 genomes]
rs73738604	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45083400-45086800	Enhancers	HSMM	muscle
2	chr6:45085400-45087800	Weak transcription	NHDF-Ad	bronchial
3	chr6:45086200-45086800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:45086200-45086800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:45086200-45087000	Flanking Active TSS	Fetal Heart	heart
6	chr6:45086200-45087400	Enhancers	Fetal Intestine Small	intestine
7	chr6:45086400-45086800	Enhancers	Psoas Muscle	Psoas
8	chr6:45086400-45086800	Enhancers	Right Ventricle	heart
9	chr6:45086400-45087000	Weak transcription	Fetal Intestine Large	intestine

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