Variant report

Variant	rs55806924
Chromosome Location	chr6:44868673-44868674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1402597	1.00[AFR][1000 genomes]
rs1411149	1.00[AFR][1000 genomes]
rs16872599	1.00[AFR][1000 genomes]
rs16872702	1.00[AFR][1000 genomes]
rs16872715	1.00[AFR][1000 genomes]
rs16872738	1.00[AFR][1000 genomes]
rs16872741	1.00[AFR][1000 genomes]
rs16872742	0.83[AFR][1000 genomes]
rs16872844	1.00[AFR][1000 genomes]
rs16872874	1.00[AFR][1000 genomes]
rs16872894	1.00[AFR][1000 genomes]
rs16872910	1.00[AFR][1000 genomes]
rs16872923	1.00[AFR][1000 genomes]
rs55905150	1.00[AFR][1000 genomes]
rs56009799	1.00[AFR][1000 genomes]
rs56310184	1.00[AFR][1000 genomes]
rs56354231	1.00[AFR][1000 genomes]
rs57619602	1.00[AFR][1000 genomes]
rs57621038	1.00[AFR][1000 genomes]
rs57864178	1.00[AFR][1000 genomes]
rs57953368	1.00[AFR][1000 genomes]
rs58164361	1.00[AFR][1000 genomes]
rs58902965	1.00[AFR][1000 genomes]
rs58929603	1.00[AFR][1000 genomes]
rs59093912	1.00[AFR][1000 genomes]
rs59582101	1.00[AFR][1000 genomes]
rs60975018	1.00[AFR][1000 genomes]
rs61700790	1.00[AFR][1000 genomes]
rs73734735	1.00[AFR][1000 genomes]
rs73734760	1.00[AFR][1000 genomes]
rs73734767	1.00[AFR][1000 genomes]
rs73734770	1.00[AFR][1000 genomes]
rs73734771	1.00[AFR][1000 genomes]
rs73734772	1.00[AFR][1000 genomes]
rs73734775	1.00[AFR][1000 genomes]
rs73734782	1.00[AFR][1000 genomes]
rs73735212	1.00[AFR][1000 genomes]
rs73735213	1.00[AFR][1000 genomes]
rs73735221	1.00[AFR][1000 genomes]
rs73735224	1.00[AFR][1000 genomes]
rs73735225	1.00[AFR][1000 genomes]
rs73735229	0.83[AFR][1000 genomes]
rs73735231	0.83[AFR][1000 genomes]
rs73735235	1.00[AFR][1000 genomes]
rs73735236	1.00[AFR][1000 genomes]
rs73735254	1.00[AFR][1000 genomes]
rs73735259	1.00[AFR][1000 genomes]
rs73735261	1.00[AFR][1000 genomes]
rs73735265	1.00[AFR][1000 genomes]
rs73735270	1.00[AFR][1000 genomes]
rs73735285	1.00[AFR][1000 genomes]
rs73735286	1.00[AFR][1000 genomes]
rs73735290	1.00[AFR][1000 genomes]
rs73735292	1.00[AFR][1000 genomes]
rs73735296	1.00[AFR][1000 genomes]
rs73735300	1.00[AFR][1000 genomes]
rs73737803	1.00[AFR][1000 genomes]
rs73737805	1.00[AFR][1000 genomes]
rs73737807	1.00[AFR][1000 genomes]
rs73737811	1.00[AFR][1000 genomes]
rs73737812	1.00[AFR][1000 genomes]
rs73737813	1.00[AFR][1000 genomes]
rs73737819	1.00[AFR][1000 genomes]
rs73737822	1.00[AFR][1000 genomes]
rs73737825	1.00[AFR][1000 genomes]
rs73737828	1.00[AFR][1000 genomes]
rs73737830	1.00[AFR][1000 genomes]
rs73737833	1.00[AFR][1000 genomes]
rs73737834	1.00[AFR][1000 genomes]
rs73737835	1.00[AFR][1000 genomes]
rs73737851	1.00[AFR][1000 genomes]
rs73737859	1.00[AFR][1000 genomes]
rs73737860	1.00[AFR][1000 genomes]
rs73737862	1.00[AFR][1000 genomes]
rs73737863	1.00[AFR][1000 genomes]
rs73737864	1.00[AFR][1000 genomes]
rs73737865	1.00[AFR][1000 genomes]
rs73737869	1.00[AFR][1000 genomes]
rs73737870	1.00[AFR][1000 genomes]
rs73737871	1.00[AFR][1000 genomes]
rs73737873	1.00[AFR][1000 genomes]
rs73737883	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44863600-44870400	Weak transcription	Aorta	Aorta
4	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:44866600-44869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:44866600-44879600	Weak transcription	Pancreas	Pancrea
7	chr6:44867800-44868800	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr6:44868000-44874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:44868600-44868800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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