Variant report

Variant	rs620074
Chromosome Location	chr6:44827064-44827065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1102211	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873005	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873019	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1717286	0.81[AFR][1000 genomes]
rs2249560	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs3857587	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs4711800	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs484267	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs486085	0.93[AFR][1000 genomes]
rs488961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57045557	1.00[EUR][1000 genomes]
rs585909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58741467	1.00[EUR][1000 genomes]
rs606553	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs625943	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs672627	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6901211	1.00[EUR][1000 genomes]
rs6902351	1.00[EUR][1000 genomes]
rs6925499	0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928062	1.00[EUR][1000 genomes]
rs7739251	1.00[EUR][1000 genomes]
rs9689041	1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44822600-44828400	Enhancers	Fetal Lung	lung
4	chr6:44823000-44829600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:44823200-44828800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:44823600-44827200	Enhancers	Brain Germinal Matrix	brain
7	chr6:44823600-44828000	Weak transcription	HSMMtube	muscle
8	chr6:44823800-44836600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44824400-44827200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:44824600-44833200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:44824600-44833200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:44825400-44827400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:44825600-44828000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:44826000-44828600	Enhancers	Fetal Heart	heart
15	chr6:44826000-44831600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:44826200-44827200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:44826200-44827800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:44826400-44827400	Enhancers	Primary T cells from cord blood	blood
19	chr6:44826400-44827400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:44826400-44828400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:44826400-44828400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:44826600-44827400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:44826600-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:44826800-44827400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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