Variant report

Variant	rs4714781
Chromosome Location	chr6:44311992-44311993
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10948136	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11571962	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12527053	0.85[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs4413612	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4711782	1.00[ASW][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs4714780	0.87[AMR][1000 genomes]
rs7757993	0.83[MEX][hapmap];0.85[AMR][1000 genomes]
rs7769148	0.88[MEX][hapmap];0.84[AMR][1000 genomes]
rs9367193	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9369477	0.87[AMR][1000 genomes]
rs9369482	1.00[ASW][hapmap]
rs9395004	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9395005	0.88[CEU][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44310600-44317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:44310800-44312200	Weak transcription	Ovary	ovary
3	chr6:44310800-44314400	Weak transcription	Pancreas	Pancrea
4	chr6:44311000-44312000	Enhancers	Brain Germinal Matrix	brain
5	chr6:44311000-44313000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:44311600-44313000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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