Variant report

Variant	rs9367193
Chromosome Location	chr6:44305211-44305212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44299856..44303347-chr6:44304768..44307907,5	K562	blood:
2	chr6:44235250..44236905-chr6:44304916..44306810,16	MCF-7	breast:
3	chr6:44231961..44235036-chr6:44304302..44308085,4	MCF-7	breast:
4	chr6:44295218..44297676-chr6:44304954..44307920,2	K562	blood:
5	chr6:44235214..44237013-chr6:44305028..44307078,2	MCF-7	breast:
6	chr6:44236552..44239013-chr6:44303796..44306117,2	K562	blood:
7	chr6:44222362..44225267-chr6:44302237..44306312,4	K562	blood:
8	chr6:44217074..44219201-chr6:44303234..44306266,3	K562	blood:
9	chr6:44222748..44225647-chr6:44303433..44307988,6	K562	blood:
10	chr6:44279014..44281330-chr6:44303755..44306182,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000178233	Chromatin interaction
ENSG00000124608	Chromatin interaction
ENSG00000146232	Chromatin interaction
ENSG00000157593	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1571773	0.81[JPT][hapmap]
rs4413612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4714780	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714781	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6458379	0.83[JPT][hapmap]
rs7745977	0.83[JPT][hapmap]
rs7757993	0.85[AMR][1000 genomes]
rs7769148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369477	0.87[AMR][1000 genomes]
rs9395004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9395005	0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9472251	0.81[JPT][hapmap]
rs9472255	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44302600-44309600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:44304000-44306800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44304400-44305400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:44305000-44306000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:44305000-44306200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:44305000-44306400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:44305000-44307400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:44305200-44305400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:44305200-44307000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:44305200-44307400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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