Variant report

Variant	rs7757993
Chromosome Location	chr6:44309346-44309347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
SPATS1	TF binding region
ENSG00000178233	Chromatin interaction
ENSG00000157593	Chromatin interaction
ENSG00000096384	Chromatin interaction
ENSG00000146232	Chromatin interaction
ENSG00000096401	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1571773	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2026308	0.83[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs4413612	0.86[CHD][hapmap]
rs4714780	0.80[EUR][1000 genomes]
rs4714781	0.83[MEX][hapmap];0.85[AMR][1000 genomes]
rs6458379	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7745977	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7763890	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7769148	0.90[CEU][hapmap]
rs9367193	0.85[AMR][1000 genomes]
rs9369477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381309	0.90[CEU][hapmap]
rs9395004	0.85[AMR][1000 genomes]
rs9395005	0.83[CHD][hapmap];0.86[AMR][1000 genomes]
rs9472251	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9472255	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44302600-44309600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:44305400-44310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44307800-44309800	Weak transcription	Liver	Liver
4	chr6:44309200-44309400	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
5	chr6:44309200-44310000	Enhancers	Brain Germinal Matrix	brain
6	chr6:44309200-44310000	Enhancers	Ovary	ovary
7	chr6:44309200-44310200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:44309200-44310200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44309200-44310200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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