Variant report

Variant	rs7769148
Chromosome Location	chr6:44304376-44304377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000157593	Chromatin interaction
ENSG00000178233	Chromatin interaction
ENSG00000146232	Chromatin interaction
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1571773	0.81[CEU][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4413612	1.00[CHB][hapmap]
rs4714780	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714781	0.88[MEX][hapmap];0.84[AMR][1000 genomes]
rs6458379	0.81[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7745977	0.81[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7757993	0.90[CEU][hapmap]
rs7763890	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9367193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369477	1.00[CEU][hapmap]
rs9381309	1.00[CEU][hapmap]
rs9395004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9395005	1.00[CHB][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes]
rs9472251	0.85[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9472255	0.81[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44302600-44309600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:44303200-44305000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:44303400-44304600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:44303400-44304600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:44303400-44304800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:44303400-44305000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:44303600-44305000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:44303600-44305200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:44303800-44304400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:44303800-44305000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:44304000-44306800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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