Variant report

Variant	rs4730545
Chromosome Location	chr7:112067070-112067071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:112062460..112065017-chr7:112066479..112069244,3	MCF-7	breast:
2	chr7:112061522..112064132-chr7:112064997..112067327,2	MCF-7	breast:
3	chr7:112058693..112068099-chr7:112086961..112092875,22	MCF-7	breast:
4	chr7:112048030..112049795-chr7:112064934..112067558,2	MCF-7	breast:
5	chr7:112058803..112077296-chr7:112087519..112096464,50	MCF-7	breast:
6	chr7:112065886..112068626-chr7:112090543..112092431,3	K562	blood:
7	chr7:112060641..112062150-chr7:112065491..112067917,2	K562	blood:
8	chr7:112059129..112067568-chr7:112088387..112093703,18	K562	blood:
9	chr7:112066485..112069249-chr7:112070711..112073624,2	MCF-7	breast:
10	chr7:112060910..112062508-chr7:112065563..112067389,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction
ENSG00000226851	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1007587	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014725	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215841	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10225540	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226613	1.00[ASN][1000 genomes]
rs10227934	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229525	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229822	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229978	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230608	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232364	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232380	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234035	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234996	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235364	0.86[EUR][1000 genomes]
rs10238838	0.86[EUR][1000 genomes]
rs10238839	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239076	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244575	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246054	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247540	1.00[ASN][1000 genomes]
rs10248735	1.00[ASN][1000 genomes]
rs10248923	0.86[EUR][1000 genomes]
rs10249330	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249953	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251712	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252768	0.86[EUR][1000 genomes]
rs10253360	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254160	1.00[ASN][1000 genomes]
rs10257492	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257831	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257850	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258413	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259763	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262723	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263624	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264118	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264797	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266828	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269074	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270151	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273461	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275709	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276062	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276695	0.86[EUR][1000 genomes]
rs10276868	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276907	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277444	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278528	0.86[EUR][1000 genomes]
rs10278642	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278883	1.00[ASN][1000 genomes]
rs10279631	1.00[ASN][1000 genomes]
rs10280408	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487289	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333548	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437769	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437855	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438058	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438257	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159423	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159431	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159432	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159440	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159444	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159475	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159496	1.00[ASN][1000 genomes]
rs17159531	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159611	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159613	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159615	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1989940	1.00[ASN][1000 genomes]
rs2040726	0.86[EUR][1000 genomes]
rs2214434	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2396525	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2396534	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2396535	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28402908	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407071	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490504	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516940	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28563007	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566952	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28594984	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28602472	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654705	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712358	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718033	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28797808	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321927	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392819	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727767	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727768	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727769	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730514	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730515	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730521	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730523	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730525	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730526	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730527	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730528	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730530	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730531	1.00[ASN][1000 genomes]
rs4730534	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730535	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730537	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730538	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730546	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57771476	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58514081	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60046006	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60317474	1.00[ASN][1000 genomes]
rs60677549	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948649	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950339	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954131	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975374	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977315	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726422	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424453	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783041	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986709	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112063600-112070000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:112064000-112067400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
5	chr7:112064400-112068200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:112064400-112068600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:112064400-112074800	Weak transcription	A549	lung
8	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
9	chr7:112066200-112067600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:112066400-112067200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:112066400-112067400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:112066400-112067600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:112066400-112067600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:112066600-112068200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:112066800-112067200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:112067000-112067600	Enhancers	Hela-S3	cervix
17	chr7:112067000-112069600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links