Variant report

Variant	rs4738616
Chromosome Location	chr8:58657835-58657836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10808685	0.80[YRI][hapmap]
rs10808686	0.80[YRI][hapmap]
rs10957018	0.80[ASN][1000 genomes]
rs13255034	0.82[YRI][hapmap]
rs4237018	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4237019	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4301443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4397388	0.81[YRI][hapmap]
rs4532583	0.80[ASN][1000 genomes]
rs4559230	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4560771	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738617	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000187	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7000215	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7000222	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58651800-58658600	Weak transcription	Gastric	stomach
2	chr8:58651800-58660400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:58653800-58658000	Weak transcription	HepG2	liver
4	chr8:58654200-58658000	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:58654200-58658000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:58654200-58658200	Weak transcription	Fetal Lung	lung
7	chr8:58654200-58658600	Weak transcription	Spleen	Spleen
8	chr8:58654200-58660400	Weak transcription	Fetal Kidney	kidney
9	chr8:58654400-58658000	Weak transcription	Psoas Muscle	Psoas
10	chr8:58654600-58658000	Weak transcription	Fetal Stomach	stomach
11	chr8:58654800-58658000	Weak transcription	HSMMtube	muscle
12	chr8:58655000-58660400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:58657600-58658000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr8:58657600-58658200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:58657600-58658400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:58657600-58658400	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr8:58657800-58658000	Flanking Active TSS	Liver	Liver
18	chr8:58657800-58658000	Active TSS	Thymus	Thymus
19	chr8:58657800-58658200	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr8:58657800-58658200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr8:58657800-58658200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr8:58657800-58658200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:58657800-58658200	Active TSS	Right Ventricle	heart
24	chr8:58657800-58658200	Active TSS	Dnd41	blood
25	chr8:58657800-58658200	Active TSS	HSMM	muscle
26	chr8:58657800-58658400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:58657800-58658400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:58657800-58658400	Active TSS	Primary monocytes fromperipheralblood	blood
29	chr8:58657800-58658400	Active TSS	Primary B cells from peripheral blood	blood
30	chr8:58657800-58658400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr8:58657800-58658400	Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr8:58657800-58658400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr8:58657800-58658400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:58657800-58658400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:58657800-58658400	Active TSS	Colonic Mucosa	Colon
36	chr8:58657800-58658400	Active TSS	Duodenum Mucosa	Duodenum
37	chr8:58657800-58658400	Active TSS	Ovary	ovary
38	chr8:58657800-58658400	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr8:58657800-58658400	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr8:58657800-58658400	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr8:58657800-58658400	Active TSS	Stomach Mucosa	stomach
42	chr8:58657800-58658400	Active TSS	GM12878-XiMat	blood
43	chr8:58657800-58658400	Active TSS	Osteobl	bone
44	chr8:58657800-58658600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr8:58657800-58658600	Active TSS	Primary T cells from cord blood	blood
46	chr8:58657800-58658600	Active TSS	Primary T cells fromperipheralblood	blood
47	chr8:58657800-58658600	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr8:58657800-58658600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:58657800-58658600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:58657800-58658600	Active TSS	Primary T killer memory cells from peripheral blood	blood

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