Variant report

Variant	rs4742755
Chromosome Location	chr9:101790933-101790934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
2	chr9:101788010..101791486-chr9:101836576..101838981,4	K562	blood:
3	chr9:101789435..101791807-chr9:101823952..101826363,2	K562	blood:
4	chr9:101781442..101783754-chr9:101790736..101792592,2	MCF-7	breast:
5	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10988595	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs11789689	0.81[MEX][hapmap]
rs11792253	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12684344	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2075666	1.00[CEU][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs2297602	0.88[CHB][hapmap];0.80[GIH][hapmap];0.87[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3780621	1.00[CEU][hapmap];0.81[MEX][hapmap]
rs3824511	0.81[MEX][hapmap]
rs58180460	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976240	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
3	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
5	chr9:101786400-101791200	Weak transcription	Osteobl	bone
6	chr9:101786400-101791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101786400-101791400	Weak transcription	HSMM	muscle
8	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:101786600-101791400	Weak transcription	NH-A	brain
10	chr9:101786600-101791600	Strong transcription	Adipose Nuclei	Adipose
11	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
13	chr9:101787200-101806400	Weak transcription	Ovary	ovary
14	chr9:101787600-101791200	Weak transcription	NHLF	lung
15	chr9:101787800-101792200	Weak transcription	Hela-S3	cervix
16	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
17	chr9:101788800-101791000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:101788800-101791600	Enhancers	Primary T cells from cord blood	blood
19	chr9:101788800-101792600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:101788800-101798400	Weak transcription	Pancreas	Pancrea
21	chr9:101789000-101791200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:101789000-101793200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:101789000-101796600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
25	chr9:101789200-101793000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:101789200-101796600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
28	chr9:101789400-101791200	Weak transcription	NHDF-Ad	bronchial
29	chr9:101789400-101797400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:101789600-101791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:101790000-101791200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:101790000-101791600	Weak transcription	HSMMtube	muscle
33	chr9:101790000-101797200	Weak transcription	Left Ventricle	heart
34	chr9:101790400-101791200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:101790400-101792400	Weak transcription	K562	blood
36	chr9:101790400-101794000	Enhancers	Placenta	Placenta
37	chr9:101790400-101795600	Weak transcription	Fetal Thymus	thymus
38	chr9:101790400-101795800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:101790400-101796400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr9:101790400-101797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:101790400-101797800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:101790600-101792400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:101790600-101797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:101790800-101796000	Weak transcription	Fetal Stomach	stomach
45	chr9:101790800-101796400	Weak transcription	Primary T cells fromperipheralblood	blood

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