Variant report

Variant	rs11792253
Chromosome Location	chr9:101795764-101795765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101794480..101796819-chr9:101798341..101801832,3	K562	blood:
2	chr9:101783791..101786672-chr9:101794290..101796962,2	K562	blood:

Variant related genes	Relation type
ENSG00000204291	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10988595	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10988660	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12684344	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075666	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2297602	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs3780621	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4742755	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58180460	0.87[AFR][1000 genomes]
rs60891605	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs949802	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs976240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
5	chr9:101788800-101798400	Weak transcription	Pancreas	Pancrea
6	chr9:101789000-101796600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
8	chr9:101789200-101796600	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
10	chr9:101789400-101797400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:101790000-101797200	Weak transcription	Left Ventricle	heart
12	chr9:101790400-101795800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:101790400-101796400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:101790400-101797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:101790400-101797800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:101790600-101797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:101790800-101796000	Weak transcription	Fetal Stomach	stomach
18	chr9:101790800-101796400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:101791000-101797200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:101791200-101800600	Weak transcription	Brain Germinal Matrix	brain
21	chr9:101791600-101797600	Weak transcription	Primary T cells from cord blood	blood
22	chr9:101793400-101795800	Weak transcription	Adipose Nuclei	Adipose
23	chr9:101793400-101802000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:101793600-101795800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:101793600-101800400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:101793600-101802000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:101793800-101796200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:101793800-101799800	Weak transcription	NHDF-Ad	bronchial
29	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
30	chr9:101794000-101797200	Weak transcription	Placenta	Placenta
31	chr9:101794000-101801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:101794200-101796000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:101794800-101796400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr9:101795200-101796200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr9:101795200-101796600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr9:101795400-101796600	Enhancers	Thymus	Thymus
37	chr9:101795400-101797800	Enhancers	HSMMtube	muscle
38	chr9:101795400-101799400	Strong transcription	Fetal Muscle Leg	muscle
39	chr9:101795400-101803200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr9:101795600-101798400	Enhancers	Fetal Thymus	thymus
41	chr9:101795600-101800000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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