Variant report

Variant	rs60891605
Chromosome Location	chr9:101807404-101807405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10988595	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10988660	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789689	0.85[ASN][1000 genomes]
rs11792253	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12684344	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2075666	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780621	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3824511	0.85[ASN][1000 genomes]
rs949802	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976240	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
4	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
5	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
8	chr9:101802400-101809200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:101804000-101809600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:101804200-101809400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:101804600-101809000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:101805800-101807600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101805800-101808400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:101805800-101810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:101805800-101819400	Strong transcription	Adipose Nuclei	Adipose
17	chr9:101805800-101820600	Weak transcription	Right Ventricle	heart
18	chr9:101806000-101807600	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr9:101806200-101807600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:101806200-101807600	ZNF genes & repeats	Aorta	Aorta
21	chr9:101806400-101807800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:101806400-101810600	Strong transcription	Ovary	ovary
23	chr9:101806600-101817000	Weak transcription	Left Ventricle	heart
24	chr9:101806800-101807800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr9:101806800-101807800	Strong transcription	Rectal Smooth Muscle	rectum
26	chr9:101806800-101808400	Strong transcription	Placenta	Placenta
27	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
28	chr9:101807200-101807600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:101807200-101811400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:101807400-101807600	ZNF genes & repeats	Lung	lung
31	chr9:101807400-101807600	Strong transcription	HSMMtube	muscle
32	chr9:101807400-101808000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr9:101807400-101811000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:101807400-101811600	Weak transcription	NHDF-Ad	bronchial
35	chr9:101807400-101814200	Weak transcription	Small Intestine	intestine
36	chr9:101807400-101819000	Strong transcription	Fetal Stomach	stomach

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