Variant report

Variant	rs12684344
Chromosome Location	chr9:101794055-101794056
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101792664..101795023-chr9:101864958..101868236,3	MCF-7	breast:
2	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:
3	chr9:101793999..101795720-chr9:101833951..101836839,3	K562	blood:
4	chr9:101793999..101795600-chr9:101833951..101836839,3	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10988595	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10988660	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11792253	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075666	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3780621	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4742755	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60891605	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs949802	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs976240	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:101787200-101806400	Weak transcription	Ovary	ovary
5	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
6	chr9:101788800-101798400	Weak transcription	Pancreas	Pancrea
7	chr9:101789000-101796600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
9	chr9:101789200-101796600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
11	chr9:101789400-101797400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:101790000-101797200	Weak transcription	Left Ventricle	heart
13	chr9:101790400-101795600	Weak transcription	Fetal Thymus	thymus
14	chr9:101790400-101795800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr9:101790400-101796400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:101790400-101797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:101790400-101797800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:101790600-101797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:101790800-101796000	Weak transcription	Fetal Stomach	stomach
20	chr9:101790800-101796400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:101791000-101797200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:101791200-101800600	Weak transcription	Brain Germinal Matrix	brain
23	chr9:101791600-101797600	Weak transcription	Primary T cells from cord blood	blood
24	chr9:101792400-101794400	Enhancers	K562	blood
25	chr9:101793400-101795800	Weak transcription	Adipose Nuclei	Adipose
26	chr9:101793400-101802000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:101793600-101795800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:101793600-101800400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:101793600-101802000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:101793800-101795400	Weak transcription	HSMMtube	muscle
31	chr9:101793800-101796200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr9:101793800-101799800	Weak transcription	NHDF-Ad	bronchial
33	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
34	chr9:101794000-101794400	Weak transcription	Aorta	Aorta
35	chr9:101794000-101795200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:101794000-101795400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:101794000-101795400	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:101794000-101797200	Weak transcription	Placenta	Placenta
39	chr9:101794000-101801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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