Variant report

Variant	rs4744089
Chromosome Location	chr9:94400758-94400759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1021440	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1021441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1027268	0.84[EUR][1000 genomes]
rs1027269	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10761121	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs10820885	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1388968	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1492680	0.96[CEU][hapmap]
rs1492683	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1492684	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1532231	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1976220	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1976221	0.80[EUR][1000 genomes]
rs2172356	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs35665194	0.80[EUR][1000 genomes]
rs4743845	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744063	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4744065	0.82[EUR][1000 genomes]
rs4744066	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744067	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744069	0.84[EUR][1000 genomes]
rs4744071	0.84[EUR][1000 genomes]
rs4744074	0.84[EUR][1000 genomes]
rs4744080	0.86[EUR][1000 genomes]
rs4744082	1.00[CEU][hapmap]
rs4744084	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6479364	0.83[EUR][1000 genomes]
rs7019783	0.83[EUR][1000 genomes]
rs7026410	0.84[EUR][1000 genomes]
rs7029450	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7036860	0.80[EUR][1000 genomes]
rs7039512	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7041541	0.83[EUR][1000 genomes]
rs7854961	0.96[CEU][hapmap]
rs7871554	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9299393	0.82[EUR][1000 genomes]
rs9409431	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs9409443	0.83[CHB][hapmap]
rs9409445	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9409446	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9409611	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs9409629	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9657697	0.88[CEU][hapmap]
rs9695578	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3584916	chr9:94394246-94403710	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv614858	chr9:94395522-94403128	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv614859	chr9:94395522-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv438109	chr9:94396059-94400758	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv614861	chr9:94396059-94403077	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv614862	chr9:94396059-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv516473	chr9:94396059-94405452	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv818713	chr9:94396059-94406084	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv614864	chr9:94396676-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
13	nsv614865	chr9:94397794-94403313	Inactive region	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
14	nsv614866	chr9:94398366-94403077	Inactive region	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
15	nsv614867	chr9:94398366-94403313	Inactive region	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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