Variant report

Variant	rs1021441
Chromosome Location	chr9:94379459-94379460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1021440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1027268	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1027269	0.84[CEU][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761121	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10820885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12337695	0.81[MEX][hapmap]
rs12339155	0.81[MEX][hapmap]
rs12551755	0.83[EUR][1000 genomes]
rs12553224	0.82[EUR][1000 genomes]
rs1388968	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1492680	0.96[CEU][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap]
rs1492683	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1492684	0.80[EUR][1000 genomes]
rs1532231	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1976220	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1976221	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2172356	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35665194	0.85[EUR][1000 genomes]
rs4451437	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4743845	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs4744060	0.83[EUR][1000 genomes]
rs4744063	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs4744065	0.86[EUR][1000 genomes]
rs4744066	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744067	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs4744069	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744071	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744074	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744080	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4744082	1.00[CEU][hapmap]
rs4744084	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs4744089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs6479364	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7019783	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7026410	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7029450	0.84[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs7036860	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7039512	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7041541	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7854961	0.96[CEU][hapmap]
rs7871554	0.84[CEU][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9299393	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9409431	0.86[EUR][1000 genomes]
rs9409432	0.82[EUR][1000 genomes]
rs9409433	0.82[EUR][1000 genomes]
rs9409434	0.82[EUR][1000 genomes]
rs9409435	0.82[EUR][1000 genomes]
rs9409436	0.83[EUR][1000 genomes]
rs9409443	0.83[CHB][hapmap]
rs9409445	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs9409446	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9409611	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs9409612	0.82[EUR][1000 genomes]
rs9409613	0.82[EUR][1000 genomes]
rs9409615	0.82[EUR][1000 genomes]
rs9409629	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9657697	0.92[CEU][hapmap]
rs9695578	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1051194	chr9:94371037-94394234	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1021441	FGD3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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