Variant report

Variant	rs4744964
Chromosome Location	chr9:72580330-72580331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72579585..72583057-chr9:72584421..72588172,5	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10511975	0.88[ASN][1000 genomes]
rs10868263	0.88[ASN][1000 genomes]
rs10868350	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140964	0.91[ASN][1000 genomes]
rs11140987	0.80[ASN][1000 genomes]
rs11141099	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11141100	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11515713	0.88[ASN][1000 genomes]
rs12379494	0.82[ASN][1000 genomes]
rs13287281	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1907961	0.83[ASN][1000 genomes]
rs1986090	0.91[ASN][1000 genomes]
rs2220735	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35253810	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35506524	0.85[ASN][1000 genomes]
rs3858106	0.83[AMR][1000 genomes]
rs4237237	0.89[AMR][1000 genomes]
rs4744581	0.97[ASN][1000 genomes]
rs4744963	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725258	0.81[ASN][1000 genomes]
rs7846994	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902963	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72576800-72580400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:72576800-72580600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:72577000-72580400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr9:72577200-72584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72577800-72580400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:72578400-72580400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:72578400-72580600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:72578600-72580400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:72578600-72580800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:72579000-72580400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:72579000-72580400	Enhancers	Fetal Brain Female	brain
12	chr9:72579000-72580400	Weak transcription	Fetal Lung	lung
13	chr9:72579000-72580600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:72579200-72580400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr9:72579200-72580400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:72579200-72580600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:72579200-72580600	Weak transcription	NH-A	brain
18	chr9:72579400-72580400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:72579400-72580400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:72579400-72580400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:72579400-72580800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:72579600-72580400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:72579600-72580400	Weak transcription	Aorta	Aorta
24	chr9:72579800-72580400	Enhancers	NHEK	skin
25	chr9:72579800-72581400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:72580000-72580400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:72580000-72580800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:72580000-72581000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:72580000-72581200	Enhancers	NHDF-Ad	bronchial
30	chr9:72580000-72586600	Weak transcription	HMEC	breast
31	chr9:72580200-72580400	Enhancers	Stomach Smooth Muscle	stomach
32	chr9:72580200-72580800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:72580200-72580800	Flanking Active TSS	Osteobl	bone
34	chr9:72580200-72581200	Enhancers	NHLF	lung
35	chr9:72580200-72581400	Enhancers	Muscle Satellite Cultured Cells	--

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