Variant report

Variant	rs11141099
Chromosome Location	chr9:72591329-72591330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10511975	0.85[ASN][1000 genomes]
rs10868263	0.85[ASN][1000 genomes]
rs10868350	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868395	0.82[ASN][1000 genomes]
rs10868396	0.82[ASN][1000 genomes]
rs11140964	0.88[ASN][1000 genomes]
rs11141100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11515713	0.85[ASN][1000 genomes]
rs13287281	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907961	0.80[ASN][1000 genomes]
rs1986090	0.89[ASN][1000 genomes]
rs2220735	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35253810	0.94[ASN][1000 genomes]
rs35506524	0.82[ASN][1000 genomes]
rs3858106	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4237237	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744581	0.94[ASN][1000 genomes]
rs4744963	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744964	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846994	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs902963	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72587000-72596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:72589800-72592200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:72589800-72592200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:72590000-72592400	Enhancers	NH-A	brain
5	chr9:72590200-72591600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:72590400-72592200	Enhancers	HUVEC	blood vessel
7	chr9:72590400-72592200	Enhancers	NHLF	lung
8	chr9:72590400-72592400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:72590600-72591400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr9:72590600-72591400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:72590600-72591400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:72590600-72591600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:72590600-72591800	Enhancers	NHDF-Ad	bronchial
14	chr9:72590600-72591800	Enhancers	Osteobl	bone
15	chr9:72590600-72592200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:72590600-72592200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:72590600-72592200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:72590600-72592200	Enhancers	HMEC	breast
19	chr9:72590600-72592200	Enhancers	NHEK	skin
20	chr9:72590800-72591400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:72590800-72591400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:72590800-72591400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr9:72590800-72591400	Enhancers	A549	lung
24	chr9:72590800-72591400	Enhancers	Hela-S3	cervix
25	chr9:72590800-72591600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:72590800-72592200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:72590800-72592200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:72591000-72591400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:72591000-72591400	Enhancers	Colon Smooth Muscle	Colon
30	chr9:72591000-72591400	Enhancers	Right Ventricle	heart
31	chr9:72591200-72591600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:72591200-72592000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:72591200-72592000	Weak transcription	Psoas Muscle	Psoas
34	chr9:72591200-72592200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:72591200-72592200	Enhancers	HSMM	muscle
36	chr9:72591200-72592200	Enhancers	HSMMtube	muscle
37	chr9:72591200-72594000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:72591200-72598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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