Variant report

Variant	rs10868396
Chromosome Location	chr9:72635526-72635527
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10868350	0.88[ASN][1000 genomes]
rs10868395	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11141099	0.82[ASN][1000 genomes]
rs11141100	0.82[ASN][1000 genomes]
rs12376586	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12380611	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12555472	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13287281	0.82[ASN][1000 genomes]
rs13287635	0.97[ASN][1000 genomes]
rs13290774	0.97[ASN][1000 genomes]
rs2975861	0.89[ASN][1000 genomes]
rs2997682	0.89[ASN][1000 genomes]
rs3858106	0.82[ASN][1000 genomes]
rs4237237	1.00[ASN][1000 genomes]
rs4397474	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446788	0.94[ASN][1000 genomes]
rs4484763	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv415477	chr9:72629228-72637760	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72629200-72635800	Weak transcription	HSMMtube	muscle
2	chr9:72633800-72636200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:72634600-72636200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:72634800-72635600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:72634800-72635600	Enhancers	Gastric	stomach
6	chr9:72634800-72636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:72634800-72636400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:72634800-72637200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:72634800-72637200	Enhancers	Fetal Lung	lung
10	chr9:72634800-72637400	Enhancers	NHEK	skin
11	chr9:72634800-72637600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:72634800-72637600	Enhancers	HMEC	breast
13	chr9:72635000-72635600	Enhancers	Pancreas	Pancrea
14	chr9:72635000-72635800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:72635000-72636000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:72635000-72636000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:72635000-72636400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:72635200-72636000	Enhancers	Stomach Mucosa	stomach
19	chr9:72635200-72636800	Enhancers	NHDF-Ad	bronchial
20	chr9:72635200-72637200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:72635200-72637200	Enhancers	NHLF	lung
22	chr9:72635200-72637600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:72635200-72637600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:72635200-72637600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:72635200-72637600	Enhancers	Brain Germinal Matrix	brain
26	chr9:72635400-72635600	Enhancers	Rectal Smooth Muscle	rectum
27	chr9:72635400-72635600	Flanking Active TSS	NH-A	brain
28	chr9:72635400-72636400	Enhancers	Hela-S3	cervix
29	chr9:72635400-72636800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:72635400-72637200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:72635400-72637200	Enhancers	HSMM	muscle
32	chr9:72635400-72637200	Enhancers	Osteobl	bone
33	chr9:72635400-72640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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