Variant report

Variant	rs13290774
Chromosome Location	chr9:72623112-72623113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10868350	0.85[ASN][1000 genomes]
rs10868395	0.97[ASN][1000 genomes]
rs10868396	0.97[ASN][1000 genomes]
rs12376586	0.88[ASN][1000 genomes]
rs12380611	0.94[ASN][1000 genomes]
rs12555472	0.94[ASN][1000 genomes]
rs13287635	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2975861	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2997682	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4237237	0.97[ASN][1000 genomes]
rs4397474	0.94[ASN][1000 genomes]
rs4446788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4484763	0.94[ASN][1000 genomes]
rs4744965	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72619600-72623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:72619600-72624800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:72619800-72626200	Weak transcription	HSMM	muscle
4	chr9:72619800-72627600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:72621200-72635400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:72621400-72628800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:72621600-72626600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:72621800-72626000	Weak transcription	HSMMtube	muscle
9	chr9:72621800-72626200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:72621800-72626200	Weak transcription	Fetal Lung	lung
11	chr9:72621800-72626200	Weak transcription	NHDF-Ad	bronchial
12	chr9:72621800-72626400	Weak transcription	NH-A	brain
13	chr9:72621800-72626400	Weak transcription	NHLF	lung
14	chr9:72621800-72627000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:72621800-72628400	Weak transcription	Osteobl	bone
16	chr9:72622000-72626200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:72622000-72626400	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:72622000-72626800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:72622000-72627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:72622000-72628200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:72622000-72628400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:72622600-72623400	Enhancers	HMEC	breast
23	chr9:72622600-72623400	Enhancers	NHEK	skin
24	chr9:72623000-72628200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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