Variant report

Variant	rs4237237
Chromosome Location	chr9:72614192-72614193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72611748..72614537-chr9:72726027..72728626,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10868350	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868395	1.00[ASN][1000 genomes]
rs10868396	1.00[ASN][1000 genomes]
rs11141099	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11141100	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12376586	0.91[ASN][1000 genomes]
rs12380611	0.97[ASN][1000 genomes]
rs12555472	0.97[ASN][1000 genomes]
rs13287281	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13287635	0.97[ASN][1000 genomes]
rs13290774	0.97[ASN][1000 genomes]
rs2220735	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2975861	0.89[ASN][1000 genomes]
rs2997682	0.89[ASN][1000 genomes]
rs3858106	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4397474	0.97[ASN][1000 genomes]
rs4446788	0.94[ASN][1000 genomes]
rs4484763	0.97[ASN][1000 genomes]
rs4744963	0.86[AMR][1000 genomes]
rs4744964	0.89[AMR][1000 genomes]
rs7846994	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72612400-72619200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:72612400-72622600	Weak transcription	NHEK	skin
3	chr9:72612800-72620800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72613000-72615000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:72613000-72615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:72613400-72618600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72613800-72614200	Flanking Active TSS	Fetal Lung	lung
8	chr9:72613800-72614600	Enhancers	Right Atrium	heart
9	chr9:72614000-72614600	Enhancers	HSMMtube	muscle

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