Variant report

Variant	rs4446788
Chromosome Location	chr9:72637119-72637120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72637007..72638664-chr9:72645208..72646717,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10868350	0.83[ASN][1000 genomes]
rs10868395	0.94[ASN][1000 genomes]
rs10868396	0.94[ASN][1000 genomes]
rs12376586	0.91[ASN][1000 genomes]
rs12380611	0.97[ASN][1000 genomes]
rs12555472	0.97[ASN][1000 genomes]
rs13287635	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13290774	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2975861	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2997682	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4237237	0.94[ASN][1000 genomes]
rs4397474	0.97[ASN][1000 genomes]
rs4484763	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv415477	chr9:72629228-72637760	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72634800-72637200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:72634800-72637200	Enhancers	Fetal Lung	lung
3	chr9:72634800-72637400	Enhancers	NHEK	skin
4	chr9:72634800-72637600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:72634800-72637600	Enhancers	HMEC	breast
6	chr9:72635200-72637200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72635200-72637200	Enhancers	NHLF	lung
8	chr9:72635200-72637600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:72635200-72637600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:72635200-72637600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:72635200-72637600	Enhancers	Brain Germinal Matrix	brain
12	chr9:72635400-72637200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:72635400-72637200	Enhancers	HSMM	muscle
14	chr9:72635400-72637200	Enhancers	Osteobl	bone
15	chr9:72635400-72640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:72635600-72638800	Weak transcription	Pancreas	Pancrea
17	chr9:72635800-72637200	Enhancers	Brain Hippocampus Middle	brain
18	chr9:72635800-72637200	Enhancers	HUVEC	blood vessel
19	chr9:72636000-72637600	Enhancers	Brain Anterior Caudate	brain
20	chr9:72636000-72637600	Enhancers	NH-A	brain
21	chr9:72636200-72637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:72636400-72637400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:72636600-72637600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:72636800-72637600	Bivalent Enhancer	NHDF-Ad	bronchial
25	chr9:72637000-72637200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:72637000-72637200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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