Variant report

Variant	rs4748761
Chromosome Location	chr10:21989245-21989246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508639	1.00[CHB][hapmap]
rs10740991	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs10828252	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs10828258	0.81[AMR][1000 genomes]
rs10828264	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.82[MKK][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10828266	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs11012737	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs11012794	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap]
rs12356674	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap]
rs12357321	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1243180	1.00[CEU][hapmap]
rs1243184	0.81[AMR][1000 genomes]
rs1243192	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1243193	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1243194	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1243195	1.00[CHB][hapmap]
rs1269454	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2026092	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2050905	0.85[MKK][hapmap]
rs2066270	0.87[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap]
rs2066271	0.87[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap]
rs2666769	1.00[CHB][hapmap]
rs2666771	1.00[CHB][hapmap]
rs2666779	1.00[CHB][hapmap];0.91[GIH][hapmap]
rs3951780	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs4024198	1.00[CHB][hapmap]
rs7082663	0.87[ASW][hapmap];1.00[CHB][hapmap];0.88[MKK][hapmap]
rs7084454	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs792453	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs792456	0.82[GIH][hapmap]
rs806774	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs946711	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4748761	MLLT10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21938600-21993800	Weak transcription	Lung	lung
2	chr10:21942600-22004000	Weak transcription	NH-A	brain
3	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:21961400-21993800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:21963000-21993600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
7	chr10:21977000-22002200	Weak transcription	Osteobl	bone
8	chr10:21977600-21989400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:21977800-21992400	Weak transcription	Fetal Thymus	thymus
10	chr10:21981400-21994200	Weak transcription	Esophagus	oesophagus
11	chr10:21981800-21993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:21982200-22001600	Weak transcription	Placenta	Placenta
13	chr10:21983800-22002000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:21984000-21992400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:21984200-21993800	Weak transcription	Pancreas	Pancrea
17	chr10:21984200-21994400	Weak transcription	Ovary	ovary
18	chr10:21984400-21993000	Weak transcription	Left Ventricle	heart
19	chr10:21984400-22002800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:21984800-21990400	Weak transcription	Fetal Stomach	stomach
21	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:21985600-21989600	Weak transcription	Primary T cells from cord blood	blood
23	chr10:21986400-21989600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:21986400-21991000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:21986600-21990000	ZNF genes & repeats	Dnd41	blood
26	chr10:21986600-21990400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:21987000-21990200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:21987200-21993800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:21987400-21990200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:21987400-21990600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:21987400-21990600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr10:21987400-22004000	Weak transcription	Fetal Kidney	kidney
33	chr10:21987600-21994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:21987600-21996600	Weak transcription	HSMM	muscle
35	chr10:21987800-21999000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:21988000-21989800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr10:21988000-21989800	ZNF genes & repeats	HepG2	liver
38	chr10:21988000-21990200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:21988000-21993600	Weak transcription	Fetal Intestine Small	intestine
40	chr10:21988200-21989800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
41	chr10:21988200-21989800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr10:21988200-21990000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:21988200-21990200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr10:21988200-21990200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr10:21988200-21990200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr10:21988200-21990200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr10:21988400-21990000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:21988400-21990000	ZNF genes & repeats	A549	lung
49	chr10:21988400-21990200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
50	chr10:21988400-21990200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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