Variant report

Variant	rs475398
Chromosome Location	chr6:145609424-145609425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196525	1.00[ASN][1000 genomes]
rs473546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478646	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479716	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481470	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494020	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497046	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500566	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs502817	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506468	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519860	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523635	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524922	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525857	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527009	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529521	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550137	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552625	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556291	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557229	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558138	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559923	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62437864	1.00[ASN][1000 genomes]
rs7753538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497238	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497239	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524076	chr6:145600618-145609950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145609400-145610400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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