Variant report

Variant	rs12196525
Chromosome Location	chr6:145514995-145514996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457054	1.00[ASN][1000 genomes]
rs10457770	1.00[ASN][1000 genomes]
rs473546	1.00[ASN][1000 genomes]
rs474416	1.00[ASN][1000 genomes]
rs475398	1.00[ASN][1000 genomes]
rs478646	1.00[ASN][1000 genomes]
rs479716	1.00[ASN][1000 genomes]
rs481470	1.00[ASN][1000 genomes]
rs482410	1.00[ASN][1000 genomes]
rs484097	1.00[ASN][1000 genomes]
rs492067	1.00[ASN][1000 genomes]
rs494020	1.00[ASN][1000 genomes]
rs497046	1.00[ASN][1000 genomes]
rs497629	1.00[ASN][1000 genomes]
rs500566	1.00[ASN][1000 genomes]
rs502817	1.00[ASN][1000 genomes]
rs506468	1.00[ASN][1000 genomes]
rs509140	1.00[ASN][1000 genomes]
rs519860	1.00[ASN][1000 genomes]
rs523635	1.00[ASN][1000 genomes]
rs524136	1.00[ASN][1000 genomes]
rs524922	1.00[ASN][1000 genomes]
rs525857	1.00[ASN][1000 genomes]
rs527009	1.00[ASN][1000 genomes]
rs528579	1.00[ASN][1000 genomes]
rs529521	1.00[ASN][1000 genomes]
rs544662	1.00[ASN][1000 genomes]
rs544793	1.00[ASN][1000 genomes]
rs550137	1.00[ASN][1000 genomes]
rs552625	1.00[ASN][1000 genomes]
rs556291	1.00[ASN][1000 genomes]
rs556491	1.00[ASN][1000 genomes]
rs557229	1.00[ASN][1000 genomes]
rs558138	1.00[ASN][1000 genomes]
rs558981	1.00[ASN][1000 genomes]
rs559923	1.00[ASN][1000 genomes]
rs568981	1.00[ASN][1000 genomes]
rs575076	1.00[ASN][1000 genomes]
rs62437864	1.00[ASN][1000 genomes]
rs7753538	1.00[ASN][1000 genomes]
rs9322020	1.00[ASN][1000 genomes]
rs9497231	1.00[ASN][1000 genomes]
rs9497238	1.00[ASN][1000 genomes]
rs9497239	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886743	chr6:145433861-145528057	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv886744	chr6:145452401-145528057	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886745	chr6:145494486-145554124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145514600-145527400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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