Variant report

Variant	rs552625
Chromosome Location	chr6:145601346-145601347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10457054	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457770	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196525	1.00[ASN][1000 genomes]
rs473546	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474416	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475398	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481470	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482410	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484097	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492067	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497629	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs502817	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506468	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509140	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524136	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527009	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528418	0.81[AMR][1000 genomes]
rs528579	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529521	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544662	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544793	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557229	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558981	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568981	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575076	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62437864	1.00[ASN][1000 genomes]
rs7753538	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322020	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497231	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497238	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497239	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524076	chr6:145600618-145609950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145598400-145603600	Weak transcription	Stomach Mucosa	stomach
2	chr6:145599000-145601400	Enhancers	Fetal Brain Male	brain
3	chr6:145599800-145607400	Weak transcription	Fetal Heart	heart

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