Variant report

Variant	rs4754133
Chromosome Location	chr11:105503658-105503659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10895846	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895847	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895848	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10895849	0.88[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11226814	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12574741	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17104369	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2409574	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3170	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4261254	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4301761	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4754134	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56034429	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6591137	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7102566	0.80[MKK][hapmap]
rs7122727	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4754133	ANGPTL5	cis	cerebellum	SCAN
rs4754133	GRIA4	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105491000-105506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105499400-105504200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:105501000-105504000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:105502600-105513800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:105502800-105523200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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