Variant report

Variant	rs3170
Chromosome Location	chr11:105513061-105513062
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1037090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10502059	0.80[CHB][hapmap]
rs10502060	0.80[CHB][hapmap]
rs10791764	0.80[CHB][hapmap]
rs10895846	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895847	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895848	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895849	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895851	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs10895852	0.94[AFR][1000 genomes]
rs10895853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10895856	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10895870	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11226814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11226818	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs11226819	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs11226820	0.84[CHB][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes]
rs11226822	0.87[ASN][1000 genomes]
rs11226825	0.80[ASN][1000 genomes]
rs11226827	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs11601239	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11601808	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs11606220	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12286810	0.93[AFR][1000 genomes]
rs12290919	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12294986	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs12417624	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12574741	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575513	0.88[AFR][1000 genomes]
rs12575516	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs12576615	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs1445599	0.93[AFR][1000 genomes]
rs1445600	0.94[AFR][1000 genomes]
rs1445607	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1445610	0.93[AFR][1000 genomes]
rs1445613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1445617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1445618	0.89[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1542162	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs17104369	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1822982	0.88[AFR][1000 genomes]
rs1822989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1942966	0.81[CHB][hapmap]
rs1942978	0.88[AFR][1000 genomes]
rs1942979	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2121061	0.94[AFR][1000 genomes]
rs2409574	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4261254	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4301761	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4754133	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4754134	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs5006890	0.93[AFR][1000 genomes]
rs56034429	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58045982	0.99[ASN][1000 genomes]
rs6591137	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7102566	0.80[CHB][hapmap];0.89[AFR][1000 genomes]
rs7106983	0.81[ASN][1000 genomes]
rs7114305	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7115043	0.94[AFR][1000 genomes]
rs7122727	0.80[CHB][hapmap]
rs7129054	0.94[AFR][1000 genomes]
rs7130156	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs722295	1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs7926520	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs7931588	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs7951215	0.90[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425422	chr11:105512958-105513312	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
2	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Ejection fraction in Tripanosoma cruzi seropositivity	24324551	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105502600-105513800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105502800-105523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105506400-105517200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:105513000-105513400	Enhancers	Fetal Intestine Small	intestine

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