Variant report

Variant	rs7931588
Chromosome Location	chr11:105593543-105593544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1037090	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10502059	0.80[CHB][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs10502060	0.80[CHB][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap]
rs10791764	0.80[CHB][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs10791767	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895848	0.86[JPT][hapmap]
rs10895849	0.86[JPT][hapmap]
rs10895853	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs10895856	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10895857	0.96[CEU][hapmap];0.96[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs10895859	0.91[EUR][1000 genomes]
rs10895860	0.96[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs10895864	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895868	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895870	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895871	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895872	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11226818	0.80[CHB][hapmap]
rs11226819	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11226820	0.84[CHB][hapmap]
rs11226822	0.82[ASN][1000 genomes]
rs11226825	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226828	0.96[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11226834	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226835	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601239	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11601808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11606220	0.85[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.82[ASN][1000 genomes]
rs12290919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291501	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12294986	0.80[CHB][hapmap]
rs12417624	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574741	0.82[JPT][hapmap];0.81[LWK][hapmap]
rs12575516	0.80[CHB][hapmap]
rs12576615	0.80[CHB][hapmap]
rs12790329	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1373926	0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1445607	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1445613	0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap]
rs1445617	0.89[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap]
rs1445618	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1445619	0.96[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1445622	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1542162	0.80[CHB][hapmap]
rs1822989	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1822993	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1838668	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs1938963	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938964	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938965	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938970	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938971	0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1942966	0.84[CHB][hapmap]
rs1942978	0.80[CHB][hapmap]
rs1954762	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964460	0.94[EUR][1000 genomes]
rs2028816	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155043	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2409574	0.86[JPT][hapmap]
rs3170	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4261254	0.86[JPT][hapmap]
rs4301761	0.86[JPT][hapmap]
rs4755107	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.82[ASN][1000 genomes]
rs499945	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs519193	0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs521893	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs556609	0.96[CEU][hapmap];0.84[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs590928	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs627041	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs632100	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs638099	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs639076	0.96[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6591137	0.86[JPT][hapmap]
rs687502	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7102566	0.80[CHB][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap]
rs7106983	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114305	0.80[CHB][hapmap]
rs7122727	0.80[CHB][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs7130156	0.80[CHB][hapmap]
rs722295	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs7926520	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928594	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7932892	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7944207	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs977516	0.96[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs994575	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7931588	KIAA1826	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105591600-105595400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105591800-105596000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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