Variant report

Variant	rs7928594
Chromosome Location	chr11:105610205-105610206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1037090	0.85[CEU][hapmap]
rs10502059	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap]
rs10502060	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs10791764	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap]
rs10791767	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895851	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs10895856	0.89[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap]
rs10895857	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895859	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895860	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10895864	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895868	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895870	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10895871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895872	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11226818	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11226819	0.86[CHB][hapmap]
rs11226820	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11226825	0.90[EUR][1000 genomes]
rs11226827	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs11226828	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226834	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11601239	0.91[CEU][hapmap];0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs11601808	0.96[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11606220	0.89[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs12286810	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12290919	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12291501	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12294986	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12417624	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12575516	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12576615	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12790329	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1373926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1445607	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1445613	0.89[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap]
rs1445617	0.85[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs1445618	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes]
rs1445619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1445622	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1542162	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1822985	0.83[ASN][1000 genomes]
rs1822989	0.85[CEU][hapmap]
rs1822993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1838668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1938963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1938964	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1938965	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1938970	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942966	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1942978	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1954762	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1964460	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2028816	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2155043	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4480512	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4755107	0.89[CEU][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs499945	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs519193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs521893	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs590928	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs627041	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs632100	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs639076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs687502	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7102566	0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap]
rs7106983	0.90[EUR][1000 genomes]
rs7114305	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7122727	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap]
rs7130156	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7926520	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7931588	0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7932892	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7944207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951215	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs977516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs994575	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv976503	chr11:105607801-105610804	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7928594	KIAA1826	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105609000-105610600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105609000-105611400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:105609200-105610800	Enhancers	Fetal Brain Male	brain
4	chr11:105609800-105610800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:105610200-105611400	Weak transcription	Brain Substantia Nigra	brain

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