Variant report

Variant	rs1822989
Chromosome Location	chr11:105536018-105536019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1037090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10502059	0.82[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10502060	0.80[CHB][hapmap];0.87[EUR][1000 genomes]
rs10791764	0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs10791767	0.85[CEU][hapmap]
rs10895846	0.80[ASN][1000 genomes]
rs10895847	0.82[ASN][1000 genomes]
rs10895848	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10895849	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10895851	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895852	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895853	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895856	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895857	0.85[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs10895860	0.85[CEU][hapmap]
rs10895870	0.86[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs10895871	0.86[CEU][hapmap]
rs11226814	0.82[ASN][1000 genomes]
rs11226818	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226819	0.80[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs11226820	0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226822	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226825	0.83[ASN][1000 genomes]
rs11226827	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11226828	0.85[CEU][hapmap]
rs11601239	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11601808	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs11606220	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12286810	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12290919	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12294986	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12417624	0.87[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12574741	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12575513	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12575516	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12576615	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1373926	0.86[CEU][hapmap]
rs1445599	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1445600	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1445607	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1445610	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1445613	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1445618	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1445619	0.86[CEU][hapmap]
rs1542162	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104369	0.83[ASN][1000 genomes]
rs1822982	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1822985	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1822993	0.85[CEU][hapmap]
rs1838668	0.85[CEU][hapmap]
rs1938971	0.86[CEU][hapmap]
rs1942966	0.83[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs1942978	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1942979	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2028816	0.90[CEU][hapmap]
rs2121061	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2409574	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4261254	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4301761	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4480512	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs4754134	0.94[ASN][1000 genomes]
rs4755107	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5006890	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs519193	0.86[CEU][hapmap]
rs556609	0.86[CEU][hapmap]
rs56034429	0.82[ASN][1000 genomes]
rs58045982	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs590928	0.85[CEU][hapmap]
rs632100	0.85[CEU][hapmap]
rs638099	0.85[CEU][hapmap]
rs639076	0.86[CEU][hapmap]
rs6591137	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7102566	0.82[CEU][hapmap];0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7106983	0.84[ASN][1000 genomes]
rs7114305	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7115043	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7122727	0.82[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7129054	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7130156	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs722295	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926520	0.85[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7928594	0.85[CEU][hapmap]
rs7931588	0.89[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7944207	0.85[CEU][hapmap]
rs7951215	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs977516	0.86[CEU][hapmap]
rs994575	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105524200-105556800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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