Variant report

Variant	rs58045982
Chromosome Location	chr11:105513701-105513702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1037090	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10502059	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10502060	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10791764	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10895846	0.83[ASN][1000 genomes]
rs10895847	0.85[ASN][1000 genomes]
rs10895848	0.85[ASN][1000 genomes]
rs10895849	0.85[ASN][1000 genomes]
rs10895851	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895852	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895853	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895856	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11226814	0.85[ASN][1000 genomes]
rs11226818	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11226819	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11226820	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11226822	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11226825	0.81[ASN][1000 genomes]
rs11601239	0.84[ASN][1000 genomes]
rs11606220	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12286810	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12294986	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12574741	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12575513	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12575516	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12576615	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1445599	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1445600	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1445607	0.84[ASN][1000 genomes]
rs1445610	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1445613	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1445617	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445618	0.81[ASN][1000 genomes]
rs1542162	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17104369	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1822982	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1822985	0.85[EUR][1000 genomes]
rs1822989	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1942966	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1942978	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1942979	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2121061	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2409574	0.87[ASN][1000 genomes]
rs3170	0.99[ASN][1000 genomes]
rs4261254	0.85[ASN][1000 genomes]
rs4301761	0.86[ASN][1000 genomes]
rs4480512	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4754134	0.99[ASN][1000 genomes]
rs4755107	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5006890	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56034429	0.85[ASN][1000 genomes]
rs6591137	0.83[ASN][1000 genomes]
rs7102566	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7106983	0.82[ASN][1000 genomes]
rs7114305	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115043	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122727	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7129054	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130156	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7951215	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105502600-105513800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105502800-105523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105506400-105517200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links