Variant report

Variant	rs6591137
Chromosome Location	chr11:105507517-105507518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1037090	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10502060	0.93[LWK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs10791764	0.93[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs10895846	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895847	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895848	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895853	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10895856	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10895870	0.85[JPT][hapmap]
rs11226814	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226819	0.90[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs11226827	0.91[JPT][hapmap]
rs11601239	0.90[JPT][hapmap]
rs11601808	0.86[JPT][hapmap]
rs11606220	0.90[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs12290919	0.86[JPT][hapmap]
rs12417624	0.86[JPT][hapmap]
rs12574741	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1445607	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1445613	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1445617	0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs1445618	0.90[JPT][hapmap]
rs17104369	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1822989	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1838668	0.83[ASW][hapmap]
rs1942966	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs2409574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3170	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4261254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4301761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754133	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4754134	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4755107	0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs56034429	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58045982	0.83[ASN][1000 genomes]
rs7122727	0.85[LWK][hapmap]
rs722295	0.84[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7926520	0.86[JPT][hapmap]
rs7931588	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6591137	ANGPTL5	cis	cerebellum	SCAN
rs6591137	GRIA4	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105502600-105513800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105502800-105523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105506400-105517200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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