Variant report

Variant	rs2028816
Chromosome Location	chr11:105571839-105571840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1037090	0.90[CEU][hapmap];0.85[ASN][1000 genomes]
rs10791767	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895856	0.92[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10895857	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10895859	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10895860	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895864	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895868	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895870	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895871	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895872	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11226822	0.85[ASN][1000 genomes]
rs11226825	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226827	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226828	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11226834	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11226835	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11601239	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11601808	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606220	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs12290919	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291501	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12417624	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790329	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1373926	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1445607	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1445613	0.85[CEU][hapmap]
rs1445617	0.89[CEU][hapmap];0.81[ASN][1000 genomes]
rs1445618	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1445619	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1445622	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822989	0.90[CEU][hapmap]
rs1822993	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1838668	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1938963	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938964	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938965	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938970	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938971	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1954762	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1964460	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2155043	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4755107	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs499945	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs519193	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs521893	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs556609	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs590928	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs627041	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632100	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs638099	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs639076	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs687502	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7106983	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926520	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928594	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7931588	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932892	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7944207	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs977516	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs994575	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105568200-105572000	Enhancers	Brain Substantia Nigra	brain
4	chr11:105568600-105576400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:105570400-105575800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:105571200-105576400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:105571600-105576800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:105571600-105589000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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