Variant report

Variant	rs1938965
Chromosome Location	chr11:105589769-105589770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1037090	0.84[ASN][1000 genomes]
rs10791767	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895856	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10895857	0.81[EUR][1000 genomes]
rs10895859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895860	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895864	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10895868	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895870	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895871	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895872	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11226822	0.84[ASN][1000 genomes]
rs11226825	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226827	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226828	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11226834	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11226835	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601239	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11601808	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606220	0.84[ASN][1000 genomes]
rs12290919	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291501	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12417624	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12790329	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1373926	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1445607	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1445618	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445619	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1445622	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822993	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1838668	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938963	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938964	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938970	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1938971	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1954762	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964460	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2028816	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155043	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4755107	0.84[ASN][1000 genomes]
rs499945	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs519193	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs521893	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs556609	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs590928	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs627041	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs632100	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs638099	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs639076	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs687502	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7106983	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7926520	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928594	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7931588	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7932892	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7944207	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs977516	0.90[EUR][1000 genomes]
rs994575	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105589000-105589800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105589200-105589800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:105589200-105589800	Enhancers	Fetal Brain Female	brain
5	chr11:105589200-105590000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:105589200-105590400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:105589200-105590400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:105589200-105590400	Enhancers	Fetal Brain Male	brain
9	chr11:105589400-105590200	Active TSS	Brain Anterior Caudate	brain
10	chr11:105589400-105590200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:105589400-105590200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:105589400-105590400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:105589400-105590400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:105589400-105590800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:105589400-105590800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:105589400-105590800	Enhancers	Brain Germinal Matrix	brain
17	chr11:105589400-105591400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:105589400-105591600	Enhancers	Brain Substantia Nigra	brain
19	chr11:105589600-105590000	Enhancers	Hela-S3	cervix
20	chr11:105589600-105590600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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