Variant report

Variant	rs1964460
Chromosome Location	chr11:105565108-105565109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105559361..105561929-chr11:105564527..105567023,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10502059	0.84[ASN][1000 genomes]
rs10502060	0.81[ASN][1000 genomes]
rs10791764	0.83[ASN][1000 genomes]
rs10791767	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895851	0.84[ASN][1000 genomes]
rs10895852	0.84[ASN][1000 genomes]
rs10895856	0.83[EUR][1000 genomes]
rs10895857	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895859	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895860	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895864	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895868	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10895870	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895871	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895872	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11226818	0.83[ASN][1000 genomes]
rs11226819	0.84[ASN][1000 genomes]
rs11226820	0.84[ASN][1000 genomes]
rs11226825	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11226827	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11226828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11226834	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11226835	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11601239	0.85[EUR][1000 genomes]
rs11601808	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12286810	0.84[ASN][1000 genomes]
rs12290919	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12291501	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12294986	0.82[ASN][1000 genomes]
rs12417624	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12575513	0.84[ASN][1000 genomes]
rs12575516	0.83[ASN][1000 genomes]
rs12576615	0.84[ASN][1000 genomes]
rs12790329	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373926	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445599	0.83[ASN][1000 genomes]
rs1445600	0.83[ASN][1000 genomes]
rs1445607	0.84[EUR][1000 genomes]
rs1445610	0.85[ASN][1000 genomes]
rs1445618	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1445619	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445622	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1542162	0.84[ASN][1000 genomes]
rs1822982	0.84[ASN][1000 genomes]
rs1822985	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1822993	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1838668	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938963	0.93[EUR][1000 genomes]
rs1938964	0.94[EUR][1000 genomes]
rs1938965	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938970	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938971	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1942966	0.84[ASN][1000 genomes]
rs1942978	0.83[ASN][1000 genomes]
rs1942979	0.82[ASN][1000 genomes]
rs1954762	0.93[EUR][1000 genomes]
rs2028816	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2121061	0.84[ASN][1000 genomes]
rs2155043	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4480512	0.84[ASN][1000 genomes]
rs499945	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs519193	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs521893	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs556609	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590928	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs627041	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs632100	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs638099	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs639076	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs687502	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102566	0.84[ASN][1000 genomes]
rs7106983	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7114305	0.84[ASN][1000 genomes]
rs7115043	0.84[ASN][1000 genomes]
rs7122727	0.84[ASN][1000 genomes]
rs7129054	0.82[ASN][1000 genomes]
rs7130156	0.84[ASN][1000 genomes]
rs7926520	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7928594	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7931588	0.94[EUR][1000 genomes]
rs7932892	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7944207	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951215	0.84[ASN][1000 genomes]
rs977516	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs994575	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105568400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105564800-105569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:105564800-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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