Variant report

Variant	rs1445619
Chromosome Location	chr11:105570439-105570440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1037090	0.86[CEU][hapmap]
rs10502059	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10502060	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10791764	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10791767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895851	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10895856	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10895857	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10895859	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895860	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895864	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895868	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895870	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895872	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226818	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs11226819	0.87[CHB][hapmap]
rs11226820	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs11226825	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11226827	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11226828	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226834	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226835	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11601239	0.91[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs11601808	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11606220	0.88[CEU][hapmap]
rs12286810	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12290919	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12291501	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12294986	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs12417624	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12575516	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12576615	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12790329	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1373926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1445607	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1445613	0.88[CEU][hapmap]
rs1445617	0.85[CEU][hapmap]
rs1445618	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1445622	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1542162	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1822985	0.86[ASN][1000 genomes]
rs1822989	0.86[CEU][hapmap]
rs1822993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1838668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938963	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1938964	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1938965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938970	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1942966	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1942978	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1954762	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1964460	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2028816	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2155043	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4480512	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4755107	0.88[CEU][hapmap]
rs499945	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs521893	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs556609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs627041	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs632100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs639076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687502	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102566	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7106983	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7114305	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7122727	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7130156	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7926520	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7928594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931588	0.96[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7932892	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7944207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951215	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs977516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105568200-105571600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:105568200-105572000	Enhancers	Brain Substantia Nigra	brain
5	chr11:105568600-105570800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:105568600-105571600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105568600-105576400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:105569000-105570600	Enhancers	Brain Hippocampus Middle	brain
9	chr11:105569200-105571800	Enhancers	Brain Angular Gyrus	brain
10	chr11:105569400-105571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:105570200-105570600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:105570400-105575800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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