Variant report

Variant	rs4771999
Chromosome Location	chr13:98153436-98153437
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1159278	0.91[ASW][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap]
rs11616843	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12873919	0.81[LWK][hapmap]
rs1304392	1.00[ASW][hapmap];0.91[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap]
rs1854225	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1887561	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2389910	0.91[ASW][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap]
rs4346086	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4400904	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7322222	0.82[MEX][hapmap]
rs7982432	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9300422	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516959	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9516967	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9554396	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98147400-98154400	Weak transcription	Right Atrium	heart
2	chr13:98148000-98153800	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:98149200-98154200	Weak transcription	Fetal Lung	lung
4	chr13:98149200-98156400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:98149400-98154000	Weak transcription	Placenta	Placenta
6	chr13:98150600-98154200	Weak transcription	Fetal Stomach	stomach
7	chr13:98151400-98155800	Weak transcription	Fetal Intestine Large	intestine
8	chr13:98151600-98157000	Weak transcription	Fetal Intestine Small	intestine
9	chr13:98153200-98155200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:98153400-98153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr13:98153400-98155000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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