Variant report

Variant	rs4775899
Chromosome Location	chr15:50967723-50967724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50967277..50972737-chr15:50976604..50980349,6	K562	blood:
2	chr15:50967384..50968440-chr15:51199299..51199841,3	K562	blood:
3	chr15:50966474..50968190-chr15:51199130..51200749,2	K562	blood:
4	chr15:50967599..50968454-chr15:51200392..51201306,2	MCF-7	breast:
5	chr15:50967645..50968530-chr9:80744987..80745667,2	MCF-7	breast:
6	chr15:50966047..50970596-chr15:50977170..50981090,8	MCF-7	breast:
7	chr15:50966292..50969121-chr15:50972031..50974489,2	MCF-7	breast:
8	chr15:50966245..50970616-chr15:51167760..51171279,6	MCF-7	breast:
9	chr15:50967409..50968619-chr15:51168790..51169663,6	MCF-7	breast:
10	chr15:50967579..50968379-chr15:51200321..51201215,3	MCF-7	breast:
11	chr15:50967518..50968536-chr15:51177697..51178744,10	MCF-7	breast:
12	chr15:50967277..50971485-chr15:50976604..50981014,4	K562	blood:
13	chr15:50965673..50968390-chr15:50973534..50976519,4	MCF-7	breast:
14	chr15:50962661..50965570-chr15:50966953..50968681,2	MCF-7	breast:
15	chr15:50967262..50968901-chr15:51168741..51169920,12	MCF-7	breast:
16	chr15:50952539..50954101-chr15:50965400..50967818,2	MCF-7	breast:
17	chr15:50967034..50970898-chr15:50976195..50981538,7	MCF-7	breast:
18	chr15:50967423..50968891-chr15:51177782..51178702,3	MCF-7	breast:
19	chr15:50967058..50969955-chr15:51199696..51202065,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000081014	Chromatin interaction
ENSG00000092439	Chromatin interaction
ENSG00000243027	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10775143	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070795	0.81[CEU][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap]
rs11070809	0.86[CHB][hapmap]
rs11630165	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11632543	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11635045	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11636576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11636930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11636964	0.87[CHD][hapmap]
rs11855605	0.91[CHB][hapmap]
rs11855889	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12324599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439561	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442787	0.87[CHD][hapmap]
rs12593469	0.86[CHB][hapmap]
rs12708424	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900658	0.86[CHB][hapmap]
rs12906409	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12909531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913763	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12915052	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1395297	0.87[CHD][hapmap]
rs2011064	0.87[CHD][hapmap]
rs2135452	0.83[CHD][hapmap]
rs2292175	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414061	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414074	0.82[CHD][hapmap]
rs2414077	0.88[EUR][1000 genomes]
rs2630	0.83[CHD][hapmap]
rs2899460	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2899463	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098183	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs3098190	0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]
rs3098194	0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap]
rs3098195	0.81[EUR][1000 genomes]
rs3098196	0.81[EUR][1000 genomes]
rs3098198	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs3101852	0.87[CHD][hapmap]
rs3101853	0.87[CHD][hapmap]
rs3105591	0.89[CHD][hapmap]
rs3105592	1.00[ASW][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3105593	0.84[ASW][hapmap];0.89[CHD][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap]
rs3105596	0.80[EUR][1000 genomes]
rs3109883	0.84[EUR][1000 genomes]
rs3109887	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs3109890	0.84[EUR][1000 genomes]
rs3109891	0.87[CHD][hapmap]
rs3109894	0.87[CHD][hapmap]
rs3131576	0.87[CHD][hapmap]
rs3131578	0.84[CHD][hapmap]
rs3131583	0.83[CHD][hapmap]
rs3131584	0.87[CHD][hapmap]
rs3131588	0.89[CHD][hapmap]
rs3131597	0.81[CEU][hapmap];0.84[CHD][hapmap]
rs3131601	0.95[AFR][1000 genomes]
rs3131609	0.87[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs3848128	0.83[CHD][hapmap]
rs4381536	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs473357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs476733	0.91[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4775894	1.00[ASW][hapmap];0.89[CHD][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs4775896	0.85[ASN][1000 genomes]
rs4775900	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs480280	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs491907	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs493728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5022760	0.91[CHB][hapmap]
rs506693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs512708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs522356	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs539383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56021532	0.83[EUR][1000 genomes]
rs56170748	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs567109	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs577583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs581172	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs616256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs644890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679774	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs7163283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7163628	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7165721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174839	0.98[AFR][1000 genomes]
rs7175149	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177123	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178070	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182855	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182865	0.81[JPT][hapmap]
rs8023255	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8023582	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8023644	0.83[CHB][hapmap]
rs8024247	0.86[CHB][hapmap]
rs8030066	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8033532	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035452	0.85[CHB][hapmap]
rs8035534	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs8035635	0.91[CHB][hapmap]
rs8035851	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8042172	0.83[CHD][hapmap]
rs8042320	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8042592	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8182079	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs874665	0.82[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9920753	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
23	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
24	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
25	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
26	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
27	nsv1051400	chr15:50890333-51046283	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4775899	TRPM7	cis	lymphoblastoid	seeQTL
rs4775899	LYSMD2	cis	parietal	SCAN
rs4775899	AP4E1	cis	parietal	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50906400-50977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50919200-50967800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:50923400-50977600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:50923600-50977600	Weak transcription	Brain Substantia Nigra	brain
5	chr15:50929200-50969200	Weak transcription	Small Intestine	intestine
6	chr15:50930000-50968000	Weak transcription	Fetal Kidney	kidney
7	chr15:50935000-50975800	Weak transcription	Pancreas	Pancrea
8	chr15:50938800-50976200	Weak transcription	Gastric	stomach
9	chr15:50939400-50975400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:50942000-50969000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:50943200-50969400	Weak transcription	Psoas Muscle	Psoas
12	chr15:50943400-50973600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:50943400-50975200	Weak transcription	Spleen	Spleen
14	chr15:50945400-50969000	Weak transcription	Right Atrium	heart
15	chr15:50946200-50968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:50946200-50969200	Weak transcription	Stomach Mucosa	stomach
17	chr15:50946200-50977200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:50946400-50969000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:50946800-50977600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:50948800-50970600	Weak transcription	Aorta	Aorta
21	chr15:50948800-50975600	Weak transcription	Thymus	Thymus
22	chr15:50948800-50977200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:50949000-50969400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:50949000-50977800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:50949200-50977000	Weak transcription	Brain Anterior Caudate	brain
26	chr15:50949200-50977200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:50950000-50976200	Weak transcription	Fetal Brain Female	brain
28	chr15:50950000-50976800	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:50950000-50976800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:50950000-50977000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:50950000-50977000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:50950200-50977400	Weak transcription	Fetal Lung	lung
33	chr15:50950800-50977400	Weak transcription	Ovary	ovary
34	chr15:50951000-50976800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:50951200-50969000	Weak transcription	NH-A	brain
36	chr15:50951600-50968800	Weak transcription	NHLF	lung
37	chr15:50953200-50968800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:50954400-50970000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:50954400-50977200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:50954600-50975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:50955000-50968000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:50955000-50975600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:50955000-50975800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:50955600-50976600	Weak transcription	HUVEC	blood vessel
45	chr15:50956200-50969000	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:50956200-50969000	Weak transcription	NHDF-Ad	bronchial
47	chr15:50956200-50969200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:50956200-50975000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:50956200-50976800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:50956200-50977000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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