Variant report

Variant	rs3131576
Chromosome Location	chr15:50863658-50863659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50861509..50865180-chr15:50865318..50870216,6	K562	blood:
2	chr15:50647415..50649249-chr15:50862816..50866408,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000092439	Chromatin interaction

Extended variants
information (count: 197 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs11070798	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070799	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070800	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070801	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11070802	0.89[ASN][1000 genomes]
rs11070805	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11633404	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11634746	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11635045	0.86[CHD][hapmap];0.81[MKK][hapmap]
rs11636576	0.89[CHD][hapmap]
rs11636930	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs11636964	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637228	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437770	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12438305	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439561	0.92[AFR][1000 genomes]
rs12439744	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440712	0.89[ASN][1000 genomes]
rs12440864	0.94[CHB][hapmap]
rs12441679	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12442197	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12442721	0.96[ASN][1000 genomes]
rs12442787	0.82[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592778	0.81[CHB][hapmap]
rs12593556	0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12595151	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395297	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542958	0.81[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap]
rs17645499	0.97[ASN][1000 genomes]
rs17645523	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17645649	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17645826	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17702175	0.97[ASN][1000 genomes]
rs17702205	0.97[ASN][1000 genomes]
rs1986074	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1986075	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2003359	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2003360	0.87[ASN][1000 genomes]
rs2011064	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2063010	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2115671	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2135452	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2174608	0.97[ASN][1000 genomes]
rs2174609	0.89[ASN][1000 genomes]
rs2292174	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292175	0.84[CHD][hapmap]
rs2414059	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2414060	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414063	0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2414064	0.86[ASN][1000 genomes]
rs2414072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414074	0.86[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2630	0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28494067	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718130	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28817917	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899462	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2899463	0.86[CHD][hapmap]
rs3098198	0.80[CHD][hapmap]
rs3098200	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3098202	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101850	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3101851	0.90[ASN][1000 genomes]
rs3101852	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101853	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101854	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3101855	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101856	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3101857	0.97[ASN][1000 genomes]
rs3101860	0.86[ASN][1000 genomes]
rs3105590	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3105591	0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105592	0.92[CEU][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3105593	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105598	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3109878	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109879	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3109880	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109881	0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109882	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109884	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3109888	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3109891	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109892	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109893	0.95[ASN][1000 genomes]
rs3109894	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109895	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109898	0.81[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs3131573	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131577	0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3131578	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3131580	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3131581	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3131582	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131583	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs3131584	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs3131585	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131586	0.90[ASN][1000 genomes]
rs3131587	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131588	0.84[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131589	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131590	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131591	0.90[ASN][1000 genomes]
rs3131592	0.88[ASN][1000 genomes]
rs3131593	0.87[ASN][1000 genomes]
rs3131594	0.83[ASN][1000 genomes]
rs3131595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3131596	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131597	0.92[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3131598	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3131599	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3131600	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3131601	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34386878	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3848128	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs3848129	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3848130	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4509958	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473357	0.87[CHD][hapmap];0.81[MKK][hapmap]
rs476733	0.86[CHD][hapmap]
rs4775893	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4775894	0.92[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4775897	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775899	0.87[CHD][hapmap]
rs506693	0.86[CHD][hapmap]
rs539383	1.00[ASW][hapmap];0.87[CHD][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs55916605	0.89[ASN][1000 genomes]
rs56015830	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56069965	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56080544	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56118429	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs567109	1.00[ASW][hapmap];0.82[CHD][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs56944208	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57002197	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs581172	0.93[AFR][1000 genomes]
rs60778210	0.94[ASN][1000 genomes]
rs616256	1.00[ASW][hapmap];0.87[CHD][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs62017189	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62017197	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62017203	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62017204	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62017206	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62017210	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62017243	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs679774	0.84[ASW][hapmap];0.84[CHD][hapmap];0.85[YRI][hapmap]
rs7165721	1.00[ASW][hapmap];0.89[CHD][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs7167138	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7174839	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7175149	0.81[CHD][hapmap]
rs7176874	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7178070	0.87[CHD][hapmap]
rs72740453	0.93[ASN][1000 genomes]
rs72740456	0.89[ASN][1000 genomes]
rs72740459	0.86[ASN][1000 genomes]
rs72740476	0.89[ASN][1000 genomes]
rs8023644	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027316	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8029073	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8033256	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033532	0.87[AFR][1000 genomes]
rs8036588	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8041463	0.94[ASN][1000 genomes]
rs8042172	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs8042320	0.84[CHD][hapmap]
rs8042592	0.92[AFR][1000 genomes]
rs874665	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs934624	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs934625	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
16	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
19	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
21	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
22	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv1043387	chr15:50822035-50940979	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
25	nsv1050385	chr15:50843495-50949798	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
27	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
28	nsv1055119	chr15:50861470-50900685	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3131576	LYSMD2	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50837000-50882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50846000-50950800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:50846200-50867000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:50847000-50920600	Weak transcription	Aorta	Aorta
5	chr15:50847600-50865200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:50847600-50866400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:50847800-50872200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:50848000-50868200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:50848400-50864800	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:50848800-50894800	Strong transcription	Liver	Liver
11	chr15:50849000-50868800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:50849000-50894600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:50849200-50864200	Weak transcription	Colonic Mucosa	Colon
14	chr15:50849200-50869000	Weak transcription	Esophagus	oesophagus
15	chr15:50849200-50874400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:50849200-50883600	Weak transcription	Pancreas	Pancrea
17	chr15:50849200-50883600	Weak transcription	Small Intestine	intestine
18	chr15:50849400-50869000	Weak transcription	Gastric	stomach
19	chr15:50849600-50864000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:50849600-50866000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:50849600-50871800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:50849800-50872800	Strong transcription	Fetal Intestine Large	intestine
23	chr15:50850000-50864800	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:50850000-50865400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:50850200-50870600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr15:50850400-50870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:50850600-50865200	Weak transcription	Brain Substantia Nigra	brain
28	chr15:50850600-50872800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:50850800-50892000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:50851000-50864200	Weak transcription	Fetal Kidney	kidney
31	chr15:50851800-50936400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:50852000-50897400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:50852200-50864000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:50852200-50890200	Weak transcription	Psoas Muscle	Psoas
35	chr15:50852200-50896800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:50852600-50866400	Weak transcription	Brain Germinal Matrix	brain
37	chr15:50852800-50879000	Strong transcription	Adipose Nuclei	Adipose
38	chr15:50852800-50887200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr15:50852800-50888600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:50852800-50893200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:50853000-50872600	Strong transcription	Fetal Thymus	thymus
42	chr15:50853000-50872800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:50853400-50867000	Weak transcription	Brain Angular Gyrus	brain
44	chr15:50854600-50957400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:50855200-50879200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:50855400-50869000	Weak transcription	Fetal Brain Female	brain
47	chr15:50855600-50865200	Weak transcription	Fetal Heart	heart
48	chr15:50855600-50890200	Weak transcription	Fetal Brain Male	brain
49	chr15:50855600-50907200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:50855600-50919600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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