Variant report

Variant	rs2135452
Chromosome Location	chr15:50835126-50835127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2A	chr15:50834770-50835147	GM12878	blood:	n/a	n/a
2	TEAD4	chr15:50834915-50835440	HepG2	liver:	n/a	n/a
3	EP300	chr15:50834957-50835319	HepG2	liver:	n/a	chr15:50835014-50835028
4	FOXA1	chr15:50834956-50835444	HepG2	liver:	n/a	n/a
5	RUNX3	chr15:50834714-50835213	GM12878	blood:	n/a	n/a
6	NFIC	chr15:50834726-50835362	GM12878	blood:	n/a	n/a
7	SP1	chr15:50834933-50835328	HepG2	liver:	n/a	n/a
8	RXRA	chr15:50835012-50835260	HepG2	liver:	n/a	n/a
9	PAX5	chr15:50834582-50835154	GM12878	blood:	n/a	chr15:50835019-50835028
10	FOXA1	chr15:50834995-50835287	HepG2	liver:	n/a	n/a
11	ARID3A	chr15:50834985-50835658	HepG2	liver:	n/a	n/a
12	FOXA2	chr15:50835034-50835323	HepG2	liver:	n/a	n/a
13	CEBPB	chr15:50834942-50835448	HepG2	liver:	n/a	n/a
14	EP300	chr15:50834990-50835310	HepG2	liver:	n/a	chr15:50835014-50835028
15	JUND	chr15:50835002-50835410	HepG2	liver:	n/a	chr15:50835032-50835041 chr15:50835232-50835244
16	FOXA1	chr15:50834972-50835423	HepG2	liver:	n/a	n/a
17	JUN	chr15:50835030-50835311	HepG2	liver:	n/a	chr15:50835032-50835041 chr15:50835232-50835244
18	CEBPB	chr15:50835004-50835447	IMR90	lung:	n/a	n/a
19	RUNX3	chr15:50834752-50835206	GM12878	blood:	n/a	n/a
20	EBF1	chr15:50835100-50835242	GM12878	blood:	n/a	n/a
21	FOXA1	chr15:50835022-50835297	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:50832514..50835250-chr15:50836851..50839622,2	MCF-7	breast:
2	chr15:50714805..50717547-chr15:50833179..50836070,2	MCF-7	breast:
3	chr15:50826682..50828335-chr15:50833156..50835191,2	K562	blood:

Variant related genes	Relation type
USP50	TF binding region
ENSG00000138592	Chromatin interaction
ENSG00000170236	Chromatin interaction

Extended variants
information (count: 210 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs11070790	0.95[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11070798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11070799	0.88[ASN][1000 genomes]
rs11070800	0.88[ASN][1000 genomes]
rs11070801	0.80[ASN][1000 genomes]
rs11070802	0.80[ASN][1000 genomes]
rs11070805	0.80[ASN][1000 genomes]
rs11633404	0.88[ASN][1000 genomes]
rs11634746	0.80[ASN][1000 genomes]
rs11635045	0.80[CHD][hapmap]
rs11636576	0.85[CHD][hapmap]
rs11636964	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11637228	0.88[ASN][1000 genomes]
rs12101377	0.90[AFR][1000 genomes]
rs12101614	0.93[AFR][1000 genomes]
rs12437770	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12438305	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12439744	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12440712	0.80[ASN][1000 genomes]
rs12440864	0.94[CHB][hapmap]
rs12441679	0.88[ASN][1000 genomes]
rs12442145	0.82[CHB][hapmap]
rs12442197	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12442721	0.86[ASN][1000 genomes]
rs12442787	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12592778	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs12593556	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12595151	0.88[ASN][1000 genomes]
rs12906839	0.81[CHB][hapmap]
rs1395297	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1542958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16963775	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16963776	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16963790	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17645499	0.87[ASN][1000 genomes]
rs17645523	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17645649	0.88[ASN][1000 genomes]
rs17646025	0.82[CHB][hapmap]
rs17702175	0.88[ASN][1000 genomes]
rs17702205	0.88[ASN][1000 genomes]
rs1986074	0.91[ASN][1000 genomes]
rs1986075	0.92[ASN][1000 genomes]
rs2003359	0.99[ASN][1000 genomes]
rs2003360	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2011064	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2063010	0.80[ASN][1000 genomes]
rs2174608	0.88[ASN][1000 genomes]
rs2174609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2292175	0.80[CHD][hapmap]
rs2414059	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2414060	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2414063	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2414070	0.96[AFR][1000 genomes]
rs2414072	0.97[ASN][1000 genomes]
rs2414073	0.97[ASN][1000 genomes]
rs2414074	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2630	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28369117	0.87[AFR][1000 genomes]
rs28405754	0.97[AFR][1000 genomes]
rs28440118	0.86[LWK][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs28494067	0.88[ASN][1000 genomes]
rs28568888	0.87[AFR][1000 genomes]
rs28608916	0.97[AFR][1000 genomes]
rs28657876	0.90[AFR][1000 genomes]
rs28699274	0.88[AFR][1000 genomes]
rs28718130	0.87[ASN][1000 genomes]
rs28749239	0.93[AFR][1000 genomes]
rs28817917	0.80[ASN][1000 genomes]
rs2899462	0.81[ASN][1000 genomes]
rs2899463	0.82[CHD][hapmap]
rs3098183	0.80[CHD][hapmap]
rs3098190	0.81[CHD][hapmap]
rs3098198	0.81[CHD][hapmap]
rs3098199	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3098200	0.82[ASN][1000 genomes]
rs3098201	0.85[ASN][1000 genomes]
rs3098202	0.99[ASN][1000 genomes]
rs3101850	0.97[ASN][1000 genomes]
rs3101851	0.97[ASN][1000 genomes]
rs3101852	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3101853	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3101854	0.92[ASN][1000 genomes]
rs3101855	0.90[ASN][1000 genomes]
rs3101856	0.89[ASN][1000 genomes]
rs3101857	0.87[ASN][1000 genomes]
rs3101858	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101859	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101860	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3105590	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3105591	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3105593	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3105595	0.88[ASN][1000 genomes]
rs3105597	0.87[ASN][1000 genomes]
rs3105598	0.88[ASN][1000 genomes]
rs3105599	0.83[ASN][1000 genomes]
rs3109877	0.86[ASN][1000 genomes]
rs3109878	0.99[ASN][1000 genomes]
rs3109879	0.98[ASN][1000 genomes]
rs3109880	0.97[ASN][1000 genomes]
rs3109881	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3109882	0.97[ASN][1000 genomes]
rs3109884	0.94[ASN][1000 genomes]
rs3109888	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3109891	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3109892	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3109893	0.85[ASN][1000 genomes]
rs3109894	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3109895	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3109897	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3109898	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3109899	0.86[ASN][1000 genomes]
rs3131573	0.88[ASN][1000 genomes]
rs3131576	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs3131577	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3131578	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3131580	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3131581	0.93[ASN][1000 genomes]
rs3131582	0.87[ASN][1000 genomes]
rs3131583	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3131584	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs3131585	0.97[ASN][1000 genomes]
rs3131586	0.97[ASN][1000 genomes]
rs3131587	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3131588	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3131589	0.97[ASN][1000 genomes]
rs3131590	0.97[ASN][1000 genomes]
rs3131591	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131592	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3131593	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131594	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3131595	0.88[ASN][1000 genomes]
rs3131596	0.88[ASN][1000 genomes]
rs3131597	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3131598	0.88[ASN][1000 genomes]
rs3131600	0.83[ASN][1000 genomes]
rs3131601	0.88[ASN][1000 genomes]
rs3131609	0.82[CHD][hapmap]
rs34386878	0.81[ASN][1000 genomes]
rs3848128	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3848129	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3848130	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4509958	0.88[ASN][1000 genomes]
rs473357	0.83[CHD][hapmap]
rs476733	0.83[CHD][hapmap]
rs4775893	0.88[ASN][1000 genomes]
rs4775894	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4775897	0.80[ASN][1000 genomes]
rs4775899	0.83[CHD][hapmap]
rs506693	0.83[CHD][hapmap]
rs539383	0.83[CHD][hapmap]
rs55916605	0.80[ASN][1000 genomes]
rs56069965	0.80[ASN][1000 genomes]
rs56118429	0.83[ASN][1000 genomes]
rs56944208	0.85[ASN][1000 genomes]
rs57002197	0.88[ASN][1000 genomes]
rs60778210	0.85[ASN][1000 genomes]
rs616256	0.83[CHD][hapmap]
rs62017189	0.85[ASN][1000 genomes]
rs62017197	0.80[ASN][1000 genomes]
rs62017210	0.80[ASN][1000 genomes]
rs679774	0.85[CHD][hapmap]
rs7165721	0.85[CHD][hapmap]
rs7167138	0.80[ASN][1000 genomes]
rs7174266	0.96[AFR][1000 genomes]
rs7174839	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7176874	0.89[ASN][1000 genomes]
rs7178070	0.83[CHD][hapmap]
rs72740406	0.93[AFR][1000 genomes]
rs72740453	0.84[ASN][1000 genomes]
rs72740456	0.80[ASN][1000 genomes]
rs72740476	0.80[ASN][1000 genomes]
rs8023644	0.91[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs8027316	0.80[ASN][1000 genomes]
rs8029073	0.83[ASN][1000 genomes]
rs8031444	0.95[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8041463	0.85[ASN][1000 genomes]
rs8042172	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8042320	0.80[CHD][hapmap]
rs874665	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs934624	0.80[ASN][1000 genomes]
rs934625	0.80[ASN][1000 genomes]
rs9806676	0.95[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9920545	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1049576	chr15:50744781-50843495	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
11	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
16	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
19	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
20	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
21	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
22	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
24	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
25	nsv1043387	chr15:50822035-50940979	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2135452	TRPM7	cis	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50824800-50836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:50833400-50836200	Enhancers	NHDF-Ad	bronchial
3	chr15:50833600-50835200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:50833800-50835200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:50833800-50835400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:50833800-50836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:50834000-50835600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:50834200-50835200	Weak transcription	Fetal Kidney	kidney
9	chr15:50834200-50835200	Enhancers	Fetal Stomach	stomach
10	chr15:50834200-50835800	Enhancers	Osteobl	bone
11	chr15:50834400-50835200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:50834400-50835600	Enhancers	GM12878-XiMat	blood
13	chr15:50834400-50836000	Enhancers	HepG2	liver
14	chr15:50834400-50837000	Enhancers	Placenta	Placenta
15	chr15:50834600-50835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:50834600-50853200	Weak transcription	HSMMtube	muscle
17	chr15:50834800-50835400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:50835000-50837200	Enhancers	K562	blood

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