Variant report

Variant	rs3131583
Chromosome Location	chr15:50848996-50848997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:50847894-50849920	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000259684	TF binding region

Extended variants
information (count: 214 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs11070798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11070799	0.92[ASN][1000 genomes]
rs11070800	0.92[ASN][1000 genomes]
rs11070801	0.84[ASN][1000 genomes]
rs11070802	0.84[ASN][1000 genomes]
rs11070805	0.84[ASN][1000 genomes]
rs11633404	0.90[ASN][1000 genomes]
rs11634746	0.84[ASN][1000 genomes]
rs11635045	0.80[CHD][hapmap]
rs11636576	0.85[CHD][hapmap]
rs11636964	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11637228	0.92[ASN][1000 genomes]
rs12437770	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12437803	0.95[CEU][hapmap]
rs12438305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12439744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12440570	0.90[CEU][hapmap];0.82[CHB][hapmap];0.88[TSI][hapmap]
rs12440712	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12440864	1.00[CHB][hapmap]
rs12441679	0.92[ASN][1000 genomes]
rs12442145	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs12442197	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12442721	0.90[ASN][1000 genomes]
rs12442787	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12443147	0.84[EUR][1000 genomes]
rs12591188	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12592778	1.00[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes]
rs12593556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12595082	0.95[CEU][hapmap]
rs12595151	0.92[ASN][1000 genomes]
rs12595562	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1395297	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1542958	0.91[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs16963724	0.90[CEU][hapmap]
rs17509944	1.00[ASW][hapmap]
rs17645499	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17645523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17645649	0.92[ASN][1000 genomes]
rs17645826	0.82[ASN][1000 genomes]
rs17646025	0.90[CEU][hapmap];0.82[CHB][hapmap];0.88[TSI][hapmap]
rs17702175	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17702205	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1986074	0.95[ASN][1000 genomes]
rs1986075	0.94[ASN][1000 genomes]
rs2003359	0.95[ASN][1000 genomes]
rs2003360	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2011064	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2063010	0.84[ASN][1000 genomes]
rs2115671	0.81[ASN][1000 genomes]
rs2135452	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2174608	0.92[ASN][1000 genomes]
rs2174609	0.96[ASN][1000 genomes]
rs2241769	0.90[CEU][hapmap]
rs2292174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2292175	0.85[CHD][hapmap]
rs2414059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2414060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2414063	0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2414064	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414072	0.99[ASN][1000 genomes]
rs2414073	0.99[ASN][1000 genomes]
rs2414074	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2630	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs28494067	0.92[ASN][1000 genomes]
rs28718130	0.91[ASN][1000 genomes]
rs28817917	0.84[ASN][1000 genomes]
rs2899462	0.85[ASN][1000 genomes]
rs2899463	0.87[CHD][hapmap]
rs3098180	0.84[CEU][hapmap]
rs3098183	0.80[CHD][hapmap]
rs3098184	1.00[AFR][1000 genomes]
rs3098190	0.81[CHD][hapmap]
rs3098197	1.00[AFR][1000 genomes]
rs3098201	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3098202	0.96[ASN][1000 genomes]
rs3098204	0.84[CEU][hapmap]
rs3101850	0.97[ASN][1000 genomes]
rs3101851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101852	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3101853	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3101854	0.97[ASN][1000 genomes]
rs3101855	0.94[ASN][1000 genomes]
rs3101856	0.93[ASN][1000 genomes]
rs3101857	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101858	0.85[ASN][1000 genomes]
rs3101859	0.83[ASN][1000 genomes]
rs3101860	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3105590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3105591	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3105593	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3105595	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3105597	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3105598	0.84[ASN][1000 genomes]
rs3105599	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3109877	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3109878	0.97[ASN][1000 genomes]
rs3109879	0.97[ASN][1000 genomes]
rs3109880	0.95[ASN][1000 genomes]
rs3109881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3109882	0.97[ASN][1000 genomes]
rs3109884	0.96[ASN][1000 genomes]
rs3109888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3109891	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3109892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3109893	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3109894	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3109895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3109897	0.81[ASN][1000 genomes]
rs3109898	0.91[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs3109899	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3131565	0.90[CEU][hapmap];0.88[MEX][hapmap]
rs3131573	0.92[ASN][1000 genomes]
rs3131575	0.90[CEU][hapmap];0.88[MEX][hapmap]
rs3131576	0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs3131577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3131578	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3131580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3131581	0.97[ASN][1000 genomes]
rs3131582	0.91[ASN][1000 genomes]
rs3131584	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3131585	0.99[ASN][1000 genomes]
rs3131586	0.99[ASN][1000 genomes]
rs3131587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3131588	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3131589	0.99[ASN][1000 genomes]
rs3131590	0.99[ASN][1000 genomes]
rs3131591	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3131592	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3131593	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3131594	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131595	0.91[ASN][1000 genomes]
rs3131596	0.92[ASN][1000 genomes]
rs3131597	0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3131598	0.84[ASN][1000 genomes]
rs3131601	0.91[ASN][1000 genomes]
rs3131609	0.82[CHD][hapmap]
rs3131613	0.95[CEU][hapmap]
rs34386878	0.85[ASN][1000 genomes]
rs3848128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3848129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3848130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4509958	0.92[ASN][1000 genomes]
rs473357	0.83[CHD][hapmap]
rs476733	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs4775893	0.92[ASN][1000 genomes]
rs4775894	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4775897	0.84[ASN][1000 genomes]
rs4775899	0.83[CHD][hapmap]
rs506693	0.83[CHD][hapmap]
rs539383	0.83[CHD][hapmap]
rs55916605	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56015830	0.81[ASN][1000 genomes]
rs56069965	0.84[ASN][1000 genomes]
rs56080544	0.83[ASN][1000 genomes]
rs56118429	0.87[ASN][1000 genomes]
rs56944208	0.89[ASN][1000 genomes]
rs57002197	0.92[ASN][1000 genomes]
rs60778210	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs616256	0.83[CHD][hapmap]
rs62017189	0.88[ASN][1000 genomes]
rs62017197	0.84[ASN][1000 genomes]
rs62017203	0.83[ASN][1000 genomes]
rs62017204	0.83[ASN][1000 genomes]
rs62017206	0.83[ASN][1000 genomes]
rs62017210	0.84[ASN][1000 genomes]
rs62017243	0.83[ASN][1000 genomes]
rs679774	0.80[CHD][hapmap]
rs7165721	0.85[CHD][hapmap]
rs7167138	0.84[ASN][1000 genomes]
rs7174839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7176874	0.85[ASN][1000 genomes]
rs7178070	0.83[CHD][hapmap]
rs72740453	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72740456	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72740459	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72740476	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8023644	0.95[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs8027316	0.84[ASN][1000 genomes]
rs8029073	0.87[ASN][1000 genomes]
rs8033256	0.82[ASN][1000 genomes]
rs8036588	0.83[ASN][1000 genomes]
rs8041463	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8042172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8042320	0.85[CHD][hapmap]
rs874665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs934624	0.84[ASN][1000 genomes]
rs934625	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
16	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
19	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
21	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
22	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv1043387	chr15:50822035-50940979	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
25	nsv1050385	chr15:50843495-50949798	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
27	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3131583	TRPM7	cis	lymphoblastoid	seeQTL

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50834600-50853200	Weak transcription	HSMMtube	muscle
2	chr15:50836200-50850000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:50837000-50850600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:50837000-50851600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:50837000-50852800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:50837000-50862200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:50837000-50882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:50841200-50849800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:50841800-50849800	Weak transcription	Fetal Stomach	stomach
10	chr15:50841800-50852800	Weak transcription	Placenta	Placenta
11	chr15:50843400-50850400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:50843600-50860800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:50843800-50851600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:50844000-50855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:50844200-50862200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:50845000-50849000	Weak transcription	HSMM	muscle
17	chr15:50845200-50849000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:50845200-50851800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:50845600-50851600	Weak transcription	GM12878-XiMat	blood
20	chr15:50845800-50849600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:50846000-50849000	Weak transcription	A549	lung
22	chr15:50846000-50850400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:50846000-50950800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:50846200-50867000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:50846400-50849000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:50846600-50858600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:50846800-50849000	Weak transcription	Osteobl	bone
28	chr15:50846800-50850400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:50846800-50860800	Weak transcription	NHLF	lung
30	chr15:50847000-50849400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:50847000-50853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:50847000-50920600	Weak transcription	Aorta	Aorta
33	chr15:50847200-50849800	Weak transcription	Fetal Intestine Large	intestine
34	chr15:50847400-50849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:50847400-50849400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:50847400-50849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:50847400-50852400	Weak transcription	Primary B cells from cord blood	blood
38	chr15:50847400-50852600	Weak transcription	NHDF-Ad	bronchial
39	chr15:50847400-50852800	Weak transcription	Hela-S3	cervix
40	chr15:50847400-50855200	Weak transcription	HUVEC	blood vessel
41	chr15:50847600-50849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:50847600-50850000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:50847600-50850400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:50847600-50854400	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:50847600-50865200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:50847600-50866400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:50847800-50850800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:50847800-50851600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr15:50847800-50852800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:50847800-50853000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links