Variant report

Variant	rs4779523
Chromosome Location	chr15:31679470-31679471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31673644..31676164-chr15:31678034..31680929,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10459614	0.84[ASN][1000 genomes]
rs10851544	0.86[ASN][1000 genomes]
rs10851545	0.86[ASN][1000 genomes]
rs11630067	0.81[ASN][1000 genomes]
rs11630485	0.81[ASN][1000 genomes]
rs11631345	0.86[ASN][1000 genomes]
rs11636300	0.84[ASN][1000 genomes]
rs11639133	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12441543	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12441765	0.81[ASN][1000 genomes]
rs12594811	0.80[ASN][1000 genomes]
rs12902234	0.92[ASN][1000 genomes]
rs12910502	0.81[ASN][1000 genomes]
rs12912800	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34482222	0.84[ASN][1000 genomes]
rs4558376	0.81[ASN][1000 genomes]
rs4606678	0.86[ASN][1000 genomes]
rs4613031	0.86[ASN][1000 genomes]
rs4779525	0.84[ASN][1000 genomes]
rs4779526	0.81[ASN][1000 genomes]
rs59970767	0.94[ASN][1000 genomes]
rs6493652	0.81[ASN][1000 genomes]
rs7171667	0.86[ASN][1000 genomes]
rs8030771	0.82[ASN][1000 genomes]
rs8035633	0.81[ASN][1000 genomes]
rs8042404	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8043195	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31664800-31679800	Weak transcription	Hela-S3	cervix
2	chr15:31665400-31680000	Weak transcription	Ovary	ovary
3	chr15:31665800-31680000	Weak transcription	Fetal Lung	lung
4	chr15:31669000-31679800	Weak transcription	GM12878-XiMat	blood
5	chr15:31670800-31683800	Weak transcription	Small Intestine	intestine
6	chr15:31672200-31680000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:31672400-31679800	Weak transcription	Fetal Brain Male	brain
8	chr15:31672800-31679800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:31673000-31680000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:31673200-31679800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:31673200-31680000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:31673600-31679800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:31673600-31684000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:31673800-31679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:31673800-31679800	Weak transcription	Brain Substantia Nigra	brain
16	chr15:31673800-31680000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:31674200-31679800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:31674200-31679800	Weak transcription	NHLF	lung
19	chr15:31674200-31680000	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:31674200-31684000	Weak transcription	Colonic Mucosa	Colon
21	chr15:31674400-31680000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:31674600-31679800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:31674600-31679800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:31674600-31679800	Weak transcription	HSMMtube	muscle
25	chr15:31674600-31680000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:31674600-31683800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:31674600-31684000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:31674800-31679800	Weak transcription	Psoas Muscle	Psoas
29	chr15:31675000-31684000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:31675200-31680000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:31675200-31680000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:31675200-31681600	Weak transcription	Fetal Stomach	stomach
33	chr15:31675200-31684000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:31675400-31680000	Weak transcription	A549	lung
35	chr15:31675600-31679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:31675800-31679800	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:31675800-31680000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:31675800-31680000	Weak transcription	Spleen	Spleen
39	chr15:31675800-31683800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:31675800-31683800	Weak transcription	Right Atrium	heart
41	chr15:31675800-31684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:31676600-31683000	Weak transcription	Fetal Intestine Large	intestine
43	chr15:31676800-31679800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:31676800-31680000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr15:31676800-31681000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr15:31676800-31681000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr15:31677000-31680000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:31677000-31680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:31677000-31680000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:31677000-31681000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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