Variant report

Variant	rs12441765
Chromosome Location	chr15:31696936-31696937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31695571..31697566-chr15:31697893..31699568,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAN1-2	chr15:31695631-31697027	XLOC_011202
2	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041455
3	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041456

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10083664	0.96[ASN][1000 genomes]
rs10083682	0.96[ASN][1000 genomes]
rs10459614	0.95[ASN][1000 genomes]
rs10851544	0.94[ASN][1000 genomes]
rs10851545	0.94[ASN][1000 genomes]
rs11630067	1.00[ASN][1000 genomes]
rs11630485	1.00[ASN][1000 genomes]
rs11631345	0.94[ASN][1000 genomes]
rs11634484	0.96[ASN][1000 genomes]
rs11636300	0.92[ASN][1000 genomes]
rs11638964	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11639133	0.83[ASN][1000 genomes]
rs12441543	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594811	0.99[ASN][1000 genomes]
rs12899540	0.92[ASN][1000 genomes]
rs12902234	0.82[ASN][1000 genomes]
rs12910502	1.00[ASN][1000 genomes]
rs12912800	0.82[ASN][1000 genomes]
rs34482222	0.94[ASN][1000 genomes]
rs4346167	0.98[ASN][1000 genomes]
rs4558376	1.00[ASN][1000 genomes]
rs4606678	0.94[ASN][1000 genomes]
rs4613031	0.94[ASN][1000 genomes]
rs4779523	0.81[ASN][1000 genomes]
rs4779525	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4779526	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493652	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7165900	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170922	0.98[ASN][1000 genomes]
rs7171667	0.92[ASN][1000 genomes]
rs7174902	0.99[ASN][1000 genomes]
rs7402977	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7403010	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7496920	0.95[ASN][1000 genomes]
rs8027155	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8030771	0.99[ASN][1000 genomes]
rs8035633	1.00[ASN][1000 genomes]
rs8042404	0.82[ASN][1000 genomes]
rs8042543	0.82[AFR][1000 genomes]
rs8043195	1.00[ASN][1000 genomes]
rs9744263	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31689600-31699000	Enhancers	Fetal Thymus	thymus
2	chr15:31691200-31697000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:31691400-31699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:31692000-31697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:31692000-31697600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:31692000-31697600	Weak transcription	Stomach Mucosa	stomach
7	chr15:31692200-31697000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:31692400-31697200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:31692400-31697200	Weak transcription	Thymus	Thymus
10	chr15:31693200-31698800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:31693600-31698000	Enhancers	Lung	lung
12	chr15:31694800-31698800	Enhancers	Dnd41	blood
13	chr15:31695200-31697200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:31695200-31698800	Enhancers	Hela-S3	cervix
15	chr15:31695600-31697600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:31696000-31697600	Weak transcription	NHLF	lung
17	chr15:31696200-31698400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:31696400-31697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:31696400-31697400	Weak transcription	NHEK	skin
20	chr15:31696400-31697800	Weak transcription	NH-A	brain
21	chr15:31696400-31700600	Enhancers	Primary B cells from cord blood	blood
22	chr15:31696400-31704200	Weak transcription	HMEC	breast
23	chr15:31696600-31704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:31696800-31697200	Weak transcription	Gastric	stomach
25	chr15:31696800-31698000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:31696800-31698200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr15:31696800-31698200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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