Variant report

Variant	rs7496920
Chromosome Location	chr15:31726744-31726745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31616708..31620581-chr15:31726270..31733622,8	MCF-7	breast:
2	chr15:31492809..31493388-chr15:31725822..31726811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10083664	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10083682	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10459614	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10851544	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10851545	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630067	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630485	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631345	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11634484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636300	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11638964	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12441543	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12441765	0.95[ASN][1000 genomes]
rs12594811	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12899540	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12902234	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12910502	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12912800	0.89[CHB][hapmap]
rs34482222	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4346167	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4558376	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4606678	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4613031	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4779525	0.90[ASN][1000 genomes]
rs4779526	0.95[ASN][1000 genomes]
rs6493652	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165900	0.96[ASN][1000 genomes]
rs7170922	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171667	0.88[ASN][1000 genomes]
rs7174902	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7402977	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7403010	0.99[ASN][1000 genomes]
rs8027155	0.88[ASN][1000 genomes]
rs8030771	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035633	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9744263	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31712800-31732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:31723800-31726800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:31724000-31727000	Enhancers	Fetal Thymus	thymus
4	chr15:31724200-31726800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr15:31724800-31726800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:31725000-31726800	Enhancers	NHEK	skin
7	chr15:31725200-31726800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:31725200-31726800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:31725200-31728200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:31725400-31726800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:31725400-31726800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:31725400-31726800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:31725400-31729000	Enhancers	Lung	lung
14	chr15:31725600-31726800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:31725600-31726800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:31725600-31726800	Enhancers	Thymus	Thymus
17	chr15:31725600-31727000	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:31725600-31727000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:31725600-31727000	Enhancers	NHDF-Ad	bronchial
20	chr15:31725600-31728800	Enhancers	Esophagus	oesophagus
21	chr15:31725800-31726800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:31725800-31726800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr15:31725800-31726800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:31725800-31727000	Weak transcription	HMEC	breast
25	chr15:31726000-31731200	Enhancers	Spleen	Spleen
26	chr15:31726200-31726800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr15:31726200-31726800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr15:31726200-31726800	Enhancers	HUVEC	blood vessel
29	chr15:31726200-31726800	Enhancers	NH-A	brain
30	chr15:31726200-31727000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr15:31726200-31727200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:31726200-31727200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:31726200-31728600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr15:31726400-31726800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:31726400-31726800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:31726400-31727000	Enhancers	Primary B cells from cord blood	blood
37	chr15:31726400-31727000	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:31726400-31727000	Enhancers	Adipose Nuclei	Adipose
39	chr15:31726400-31727000	Enhancers	NHLF	lung
40	chr15:31726400-31727400	Enhancers	Stomach Mucosa	stomach
41	chr15:31726400-31727800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr15:31726400-31727800	Enhancers	Pancreas	Pancrea
43	chr15:31726400-31728000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:31726400-31728000	Enhancers	Placenta	Placenta
45	chr15:31726400-31728200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr15:31726400-31728200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:31726400-31728400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:31726400-31728600	Flanking Active TSS	GM12878-XiMat	blood
49	chr15:31726400-31728800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr15:31726400-31728800	Enhancers	Small Intestine	intestine

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