Variant report

Variant	rs4779525
Chromosome Location	chr15:31692350-31692351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31656683..31658264-chr15:31690319..31692680,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10083664	0.91[ASN][1000 genomes]
rs10083682	0.91[ASN][1000 genomes]
rs10459614	1.00[ASN][1000 genomes]
rs10851544	0.99[ASN][1000 genomes]
rs10851545	0.99[ASN][1000 genomes]
rs11630067	0.95[ASN][1000 genomes]
rs11630485	0.95[ASN][1000 genomes]
rs11631345	0.99[ASN][1000 genomes]
rs11634484	0.91[ASN][1000 genomes]
rs11636300	0.97[ASN][1000 genomes]
rs11638964	0.93[ASN][1000 genomes]
rs11639133	0.86[ASN][1000 genomes]
rs12441543	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441765	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594811	0.94[ASN][1000 genomes]
rs12899540	0.88[ASN][1000 genomes]
rs12902234	0.86[ASN][1000 genomes]
rs12910502	0.95[ASN][1000 genomes]
rs12912800	0.85[ASN][1000 genomes]
rs34482222	0.99[ASN][1000 genomes]
rs4346167	0.93[ASN][1000 genomes]
rs4558376	0.95[ASN][1000 genomes]
rs4606678	0.99[ASN][1000 genomes]
rs4613031	0.99[ASN][1000 genomes]
rs4779523	0.84[ASN][1000 genomes]
rs4779526	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59970767	0.82[ASN][1000 genomes]
rs6493652	0.95[ASN][1000 genomes]
rs7165900	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7170922	0.93[ASN][1000 genomes]
rs7171667	0.96[ASN][1000 genomes]
rs7174902	0.94[ASN][1000 genomes]
rs7402977	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7403010	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7496920	0.90[ASN][1000 genomes]
rs8027155	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8030771	0.94[ASN][1000 genomes]
rs8035633	0.95[ASN][1000 genomes]
rs8042404	0.86[ASN][1000 genomes]
rs8043195	0.95[ASN][1000 genomes]
rs9744263	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31685800-31694000	Weak transcription	Aorta	Aorta
2	chr15:31686000-31696200	Weak transcription	Gastric	stomach
3	chr15:31688000-31692600	Enhancers	Placenta	Placenta
4	chr15:31688800-31692600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:31688800-31692800	Enhancers	HMEC	breast
6	chr15:31688800-31693200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:31688800-31693400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:31688800-31693400	Enhancers	NHDF-Ad	bronchial
9	chr15:31688800-31695200	Enhancers	Osteobl	bone
10	chr15:31689000-31693400	Enhancers	NHLF	lung
11	chr15:31689200-31692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:31689600-31692400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:31689600-31692400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr15:31689600-31692600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr15:31689600-31692600	Enhancers	GM12878-XiMat	blood
16	chr15:31689600-31692600	Enhancers	HSMM	muscle
17	chr15:31689600-31693000	Enhancers	Esophagus	oesophagus
18	chr15:31689600-31693200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:31689600-31699000	Enhancers	Fetal Thymus	thymus
20	chr15:31689800-31694600	Weak transcription	Ovary	ovary
21	chr15:31690000-31692600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:31690000-31692800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:31690000-31692800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:31690200-31692400	Enhancers	Thymus	Thymus
25	chr15:31690600-31692400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:31690600-31692600	Enhancers	A549	lung
27	chr15:31690800-31692400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:31690800-31692600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:31690800-31693200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:31690800-31693200	Enhancers	NHEK	skin
31	chr15:31691000-31692400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:31691000-31694800	Weak transcription	Dnd41	blood
33	chr15:31691200-31692400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:31691200-31694400	Weak transcription	Adipose Nuclei	Adipose
35	chr15:31691200-31694800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:31691200-31697000	Weak transcription	Primary T cells from cord blood	blood
37	chr15:31691400-31692400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:31691400-31692400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:31691400-31693200	Enhancers	Hela-S3	cervix
40	chr15:31691400-31694800	Weak transcription	Fetal Heart	heart
41	chr15:31691400-31695000	Weak transcription	Fetal Intestine Small	intestine
42	chr15:31691400-31696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:31691400-31699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:31691800-31692800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:31691800-31692800	Enhancers	NH-A	brain
46	chr15:31691800-31693200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:31691800-31693600	Weak transcription	Lung	lung
48	chr15:31691800-31694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:31692000-31692400	Bivalent Enhancer	HepG2	liver
50	chr15:31692000-31692800	Weak transcription	Right Ventricle	heart

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